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{"id":"skills-0f1","title":"Per-repo LSP profiles in Nix flakes","description":"Define language servers, versions, and settings pinned per repo in flake.nix.\n\nBenefits:\n- Claude Code LSP becomes deterministic across machines/CI\n- CI can run headless LSP diagnostics as first-class check\n- Ephemeral LS sandboxes for experimental refactors\n\nExample: pin rust-analyzer version per project to avoid skill breakage.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-24T02:29:57.353003052-05:00","updated_at":"2025-12-24T02:29:57.353003052-05:00","dependencies":[{"issue_id":"skills-0f1","depends_on_id":"skills-gga","type":"blocks","created_at":"2025-12-24T02:30:06.696967182-05:00","created_by":"daemon"}]}
{"id":"skills-0nl","title":"Update orch skill to match CLI v0.1.0","description":"The orch skill (in ~/.claude/skills/orch/) is out of sync with the orch CLI.\n\nNeeded updates:\n- Fix model aliases: gpt-5 → gpt-5.2, claude-opus-4.1 → claude-opus-4.5\n- Add new aliases: deepseek, r1, qwen, qwen-fast, glm, sonar, sonar-pro\n- Document --synthesize flag for response aggregation\n- Document stdin piping support\n- Document orch models command\n- Document orch sessions command\n- Add --websearch, --serial, --allow-expensive options\n\nReference: ~/proj/orch/README.md and src/orch/models_registry.py","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T21:11:46.294285184-05:00","updated_at":"2025-12-24T01:29:54.408882125-05:00","closed_at":"2025-12-24T01:29:54.408882125-05:00","close_reason":"Updated skill with current CLI features and model aliases"}
{"id":"skills-0og","title":"spec-review: Define output capture and audit trail","description":"Reviews happen in terminal then disappear. No audit trail, no diffable history.\n\nAdd:\n- Guidance to tee output to review file (e.g., specs/{branch}/review.md)\n- Standard location for gate check results\n- Template for recording decisions and rationale","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-15T00:23:23.705164812-08:00","updated_at":"2025-12-15T13:02:32.313084337-08:00","closed_at":"2025-12-15T13:02:32.313084337-08:00"}
{"id":"skills-1ig","title":"Brainstorm agent-friendly doc conventions","description":"# Agent-Friendly Doc Conventions - Hybrid Architecture\n\n## FINAL ARCHITECTURE: Vale + LLM Hybrid\n\n### Insight\n\u003e \"Good old deterministic testing (dumb robots) is the best way to keep in check LLMs (smart robots) at volume.\"\n\n### Split by Tool\n\n| Category | Rubrics | Tool |\n|----------|---------|------|\n| Vale-only | Format Integrity, Deterministic Instructions, Terminology Strictness, Token Efficiency | Fast, deterministic, CI-friendly |\n| Vale + LLM | Semantic Headings, Configuration Precision, Security Boundaries | Vale flags, LLM suggests fixes |\n| LLM-only | Contextual Independence, Code Executability, Execution Verification | Semantic understanding required |\n\n### Pipeline\n\n```\n┌─────────────────────────────────────────────────────────────┐\n│ Stage 1: Vale (deterministic, fast, free) │\n│ - Runs in CI on every commit │\n│ - Catches 40% of issues instantly │\n│ - No LLM cost for clean docs │\n└─────────────────────┬───────────────────────────────────────┘\n │ only if Vale passes\n ▼\n┌─────────────────────────────────────────────────────────────┐\n│ Stage 2: LLM Triage (cheap model) │\n│ - Evaluates 3 semantic rubrics │\n│ - Identifies which need patches │\n└─────────────────────┬───────────────────────────────────────┘\n │ only if issues found\n ▼\n┌─────────────────────────────────────────────────────────────┐\n│ Stage 3: LLM Specialists (capable model) │\n│ - One agent per failed rubric │\n│ - Generates patches │\n└─────────────────────────────────────────────────────────────┘\n```\n\n### Why This Works\n- Vale is battle-tested, fast, CI-native\n- LLM only fires when needed (adaptive cost)\n- Deterministic rules catch predictable issues\n- LLM handles semantic/contextual issues\n\n---\n\n## Vale Rules Needed\n\n### Format Integrity\n- Existence: code blocks without language tags\n- Regex for unclosed fences\n\n### Deterministic Instructions \n- Existence: hedging words (\"might\", \"may want to\", \"consider\", \"you could\")\n\n### Terminology Strictness\n- Consistency: flag term variations\n\n### Token Efficiency\n- Existence: filler phrases (\"In this section we will...\", \"As you may know...\")\n\n### Semantic Headings (partial)\n- Existence: banned headings (\"Overview\", \"Introduction\", \"Getting Started\")\n\n### Configuration Precision (partial)\n- Existence: vague versions (\"Python 3.x\", \"recent version\")\n\n### Security Boundaries (partial)\n- Existence: hardcoded API key patterns\n\n---\n\n## NEXT STEPS\n\n1. Create Vale style for doc-review rubrics\n2. Test Vale on sample docs\n3. Design LLM prompts for semantic rubrics only\n4. Wire into orch or standalone","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-04T14:02:04.898026177-08:00","updated_at":"2025-12-04T16:43:53.0608948-08:00","closed_at":"2025-12-04T16:43:53.0608948-08:00"}
{"id":"skills-1n3","title":"Set up agent skills for Gemini CLI","description":"The AI agent skills (worklog, web-search, etc.) configured in .skills are not currently working when using the Gemini CLI. \\n\\nObserved behavior:\\n- 'worklog' command not found even after 'direnv reload'.\\n- .envrc sources ~/proj/skills/bin/use-skills.sh, but skills are not accessible in the Gemini agent session.\\n\\nNeed to:\\n1. Investigate how Gemini CLI loads its environment compared to Claude Code.\\n2. Update 'use-skills.sh' or direnv configuration to support Gemini CLI.\\n3. Ensure skill symlinks/binaries are correctly in the PATH for Gemini.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-22T17:39:28.106296919-05:00","updated_at":"2025-12-28T22:28:49.781533243-05:00","closed_at":"2025-12-28T22:28:49.781533243-05:00","close_reason":"No MCP/extensions. Gemini CLI lacks native skill support (feature request #11506 pending). Current workaround: GEMINI.md references skill paths for manual reading. Revisit when native support lands."}
{"id":"skills-20s","title":"Compare BOUNDARIES.md with upstream","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:15:53.585115099-08:00","updated_at":"2025-12-03T20:19:28.442646801-08:00","closed_at":"2025-12-03T20:19:28.442646801-08:00","dependencies":[{"issue_id":"skills-20s","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:53.586442134-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-25l","title":"Create orch skill for multi-model consensus","description":"Build a skill that exposes orch CLI capabilities to agents for querying multiple AI models","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-30T15:43:49.209528963-08:00","updated_at":"2025-11-30T15:47:36.608887453-08:00","closed_at":"2025-11-30T15:47:36.608887453-08:00"}
{"id":"skills-2hp","title":"Define agent autonomy policy for skills","description":"Disagreement in consensus:\n\nGPT: Stricter determinism to prevent 'agent drift'\nGemini: skill: should be a hint, agent can deviate if skill fails\n\nOptions:\n1. Constraint (must use skill, fail if broken)\n2. Heuristic (should use, can justify deviation)\n3. Configurable per-proto or per-step\n\nUX consideration: agents stuck in loops trying broken skills.\n\nNeeds decision before widespread adoption.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-23T19:49:59.73500059-05:00","updated_at":"2025-12-29T14:37:35.335994418-05:00","closed_at":"2025-12-29T14:37:35.335994418-05:00","close_reason":"Parked: waiting on gastown (Steve Yegge's orchestration layer for beads). Revisit when gastown lands."}
{"id":"skills-2k0","title":"Reframe elevation as scaffolding","description":"Elevation pipeline is over-optimistic. Auto-generation will produce garbage.\n\nReframe:\n- Rename to 'Pattern Extraction' or 'Skill Drafting'\n- Output is skeleton/scaffold, not complete skill\n- Require N\u003e=3 similar executions before suggesting\n- Generate promotion checklist:\n - Preconditions\n - Inputs/outputs contract\n - Failure modes observed\n - Determinism score\n- Generate tests as part of elevation\n\nHuman-in-the-loop is mandatory, not optional.\n\nFrom consensus: both models flagged as medium severity.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T19:49:48.373417035-05:00","updated_at":"2025-12-29T13:55:35.820906687-05:00","closed_at":"2025-12-29T13:55:35.820906687-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed."}
{"id":"skills-2xo","title":"Add README.md for web-search skill","description":"web-search skill has SKILL.md and scripts but no README.md. AGENTS.md says README.md is for humans, contains installation instructions, usage examples, prerequisites.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:14.26066025-08:00","updated_at":"2025-12-28T22:37:48.324822157-05:00","closed_at":"2025-12-28T22:37:48.324822157-05:00","close_reason":"Added README.md with prerequisites, usage examples, and cross-references","dependencies":[{"issue_id":"skills-2xo","depends_on_id":"skills-vb5","type":"blocks","created_at":"2025-11-30T12:01:30.240439018-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-39g","title":"RFC: .skills manifest pattern for per-repo skill deployment","description":"Document the .skills file pattern where projects declare skills in a manifest, .envrc reads it, and agents can query/edit it.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-30T12:37:50.106992381-08:00","updated_at":"2025-11-30T12:43:04.155161727-08:00","closed_at":"2025-11-30T12:43:04.155161727-08:00"}
{"id":"skills-3em","title":"Prototype elevation pipeline","description":"Build pipeline: successful molecule → skill draft\n1. On molecule close, option to 'elevate'\n2. Analyze squashed trace\n3. Extract generalizable pattern\n4. Generate SKILL.md draft\n5. Human approval gate\n\nStart simple: script that takes squashed molecule ID and outputs draft SKILL.md\n\nMigrated from dotfiles-2p2.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T19:21:08.208885336-05:00","updated_at":"2025-12-29T13:55:35.80560789-05:00","closed_at":"2025-12-29T13:55:35.80560789-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed.","dependencies":[{"issue_id":"skills-3em","depends_on_id":"skills-jeb","type":"blocks","created_at":"2025-12-23T19:21:50.034640219-05:00","created_by":"dan"},{"issue_id":"skills-3em","depends_on_id":"skills-2k0","type":"blocks","created_at":"2025-12-23T19:50:10.516122892-05:00","created_by":"daemon"}]}
{"id":"skills-3o7","title":"Fix ai-skills.nix missing sha256 hash","description":"modules/ai-skills.nix:16 has empty sha256 placeholder for opencode-skills npm package. Either get actual hash or remove/comment out the incomplete fetchFromNpm approach.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-30T11:58:24.404929863-08:00","updated_at":"2025-11-30T12:12:39.372107348-08:00","closed_at":"2025-11-30T12:12:39.372107348-08:00"}
{"id":"skills-4pw","title":"spec-review: Expand NFR checklist in prompts","description":"Current prompts mention 'performance, security, accessibility' but miss many critical NFRs.\n\nExpand to include:\n- Security (authn/authz, secrets, threat model)\n- Privacy/compliance (GDPR, PII)\n- Observability (logging, metrics, tracing)\n- Reliability (SLOs, failure modes)\n- Rollout/rollback strategy\n- Migration/backfill\n- Data retention/lifecycle\n- Cost constraints","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-15T00:23:24.485420922-08:00","updated_at":"2025-12-15T14:03:46.508452685-08:00","closed_at":"2025-12-15T14:03:46.508452685-08:00"}
{"id":"skills-4u0","title":"Skills + Molecules Integration","description":"Integrate skills system with beads molecules.\n\nKey concepts from consensus brainstorm:\n1. Skills = procedural knowledge (HOW), Molecules = work tracking (WHAT)\n2. Link via skill: field in molecule nodes\n3. Wisps as execution traces for debugging/replay\n4. Elevation pipeline: successful molecule → auto-generate skill draft\n5. Skills as transition middleware (on_enter/on_exit hooks)\n\nImplementation phases:\n- Phase 1: Document findings (ADR)\n- Phase 2: Wisp execution trace format\n- Phase 3: Elevation pipeline prototype\n- Phase 4: Test on real skill (worklog)\n\nMigrated from dotfiles-jjb.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T19:20:19.818455543-05:00","updated_at":"2025-12-29T13:55:35.782406912-05:00","closed_at":"2025-12-29T13:55:35.782406912-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed.","dependencies":[{"issue_id":"skills-4u0","depends_on_id":"skills-rex","type":"blocks","created_at":"2025-12-23T19:22:10.725578029-05:00","created_by":"dan"},{"issue_id":"skills-4u0","depends_on_id":"skills-vpy","type":"blocks","created_at":"2025-12-23T19:23:18.166650023-05:00","created_by":"dan"},{"issue_id":"skills-4u0","depends_on_id":"skills-u3d","type":"blocks","created_at":"2025-12-23T19:23:28.59360697-05:00","created_by":"dan"}]}
{"id":"skills-4yn","title":"Decide on screenshot-latest skill deployment","description":"DEPLOYED.md shows screenshot-latest as 'Not yet deployed - Pending decision'. Low risk skill that finds existing files. Need to decide whether to deploy or archive.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:33.099790809-08:00","updated_at":"2025-12-28T20:55:18.515543619-05:00","closed_at":"2025-12-28T20:55:18.515543619-05:00","close_reason":"Decided to deploy - low risk, useful for avoiding path typing. Added to dotfiles claude.nix."}
{"id":"skills-53k","title":"Design graph-based doc discovery","description":"How does doc-review find and traverse documentation?\n\nApproach: Start from README.md or AGENTS.md, graph out from there.\n\nDesign questions:\n- Parse markdown links to find related docs?\n- Follow only relative links or also section references?\n- How to handle circular references?\n- Depth limit or exhaustive traversal?\n- What about orphan docs not linked from root?\n- How to represent the graph for chunking decisions?\n\nConsiderations:\n- Large repos may have hundreds of markdown files\n- Not all .md files are \"documentation\" (changelogs, templates, etc.)\n- Some docs are generated and shouldn't be patched\n\nDeliverable: Algorithm/pseudocode for doc discovery + chunking strategy.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-04T14:02:13.316843518-08:00","updated_at":"2025-12-04T16:43:58.277061015-08:00","closed_at":"2025-12-04T16:43:58.277061015-08:00"}
{"id":"skills-5hb","title":"spec-review: Add Prerequisites section documenting dependencies","description":"SKILL.md and process docs assume orch is installed, prompt files exist, models are available, but none of this is documented.\n\nAdd:\n- orch install instructions/link\n- Required env vars and model availability\n- Prompt file locations\n- Expected repo structure (specs/ convention)\n- Troubleshooting section for common failures","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-15T00:23:23.030537501-08:00","updated_at":"2025-12-15T01:12:36.457092612-08:00","closed_at":"2025-12-15T01:12:36.457092612-08:00"}
{"id":"skills-5tq","title":"LSP diagnostic harvest → auto-create beads","description":"Periodic/nightly headless LSP scan that:\n- Gathers diagnostics (unused vars, type errors, deprecations, lint warnings)\n- Groups by subsystem/module\n- Auto-creates beads with severity thresholds\n- Enables 'refactor quests' - parent bead with children per symbol\n\nRun via CI or cron, feed results back into beads automatically.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-24T02:29:56.191762416-05:00","updated_at":"2025-12-24T02:29:56.191762416-05:00","dependencies":[{"issue_id":"skills-5tq","depends_on_id":"skills-gga","type":"blocks","created_at":"2025-12-24T02:30:06.471853411-05:00","created_by":"daemon"}]}
{"id":"skills-5v8","title":"Replace SKILL.md with upstream version","description":"Upstream has 644 lines vs our 122. Missing: self-test questions, notes quality checks, token checkpointing, database selection, field usage table, lifecycle workflow, common patterns, troubleshooting","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-03T20:15:53.025829293-08:00","updated_at":"2025-12-03T20:16:20.470185004-08:00","closed_at":"2025-12-03T20:16:20.470185004-08:00","dependencies":[{"issue_id":"skills-5v8","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:53.027601712-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-5vg","title":"spec-review: Add context/assumptions step to prompts","description":"Reviews can become speculative without establishing context first.\n\nAdd to prompts:\n- List assumptions being made\n- Distinguish: missing from doc vs implied vs out of scope\n- Ask clarifying questions if critical context missing","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-15T00:23:25.681448596-08:00","updated_at":"2025-12-15T14:06:15.415750911-08:00","closed_at":"2025-12-15T14:06:15.415750911-08:00"}
{"id":"skills-6ae","title":"Create ui-query skill for AT-SPI integration","description":"Create a skill that provides programmatic UI tree access via AT-SPI.\n\n## Context\nAT-SPI is now enabled in dotfiles (services.gnome.at-spi2-core + QT_LINUX_ACCESSIBILITY_ALWAYS_ON).\nThis complements niri-window-capture (visual) with semantic UI data.\n\n## Capabilities\n- Read text from GTK/Qt widgets directly (no OCR)\n- Find UI elements by role (button, text-field, menu)\n- Query element states (focused, enabled, checked)\n- Get element positions for potential input simulation\n- Navigate parent/child relationships\n\n## Suggested structure\nskills/ui-query/\n├── SKILL.md\n├── scripts/\n│ ├── list-windows.py # Windows with AT-SPI info\n│ ├── get-text.py # Extract text from window/element\n│ ├── find-element.py # Find by role/name\n│ └── query-state.py # Element states\n└── README.md\n\n## Notes\n- Start simple: list windows, get text\n- pyatspi available via python3Packages.pyatspi\n- Use accerciser (now installed) to explore the tree","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-29T15:37:55.592793763-05:00","created_by":"dan","updated_at":"2025-12-29T15:37:55.592793763-05:00"}
{"id":"skills-6e3","title":"Searchable Claude Code conversation history","description":"## Context\nClaude Code persists full conversations in `~/.claude/projects/\u003cproject\u003e/\u003cuuid\u003e.jsonl`. This is complete but not searchable - can't easily find \"that session where we solved X\".\n\n## Goal\nMake conversation history searchable without requiring manual worklogs.\n\n## Approach\n\n### Index structure\n```\n~/.claude/projects/\u003cproject\u003e/\n \u003cuuid\u003e.jsonl # raw conversation (existing)\n index.jsonl # session metadata + summaries (new)\n```\n\n### Index entry format\n```json\n{\n \"uuid\": \"f9a4c161-...\",\n \"date\": \"2025-12-17\",\n \"project\": \"/home/dan/proj/skills\",\n \"summary\": \"Explored Wayland desktop automation, AT-SPI investigation, vision model benchmark\",\n \"keywords\": [\"wayland\", \"niri\", \"at-spi\", \"automation\", \"seeing-problem\"],\n \"commits\": [\"906f2bc\", \"0b97155\"],\n \"duration_minutes\": 90,\n \"message_count\": 409\n}\n```\n\n### Features needed\n1. **Index builder** - Parse JSONL, extract/generate summary + keywords\n2. **Search CLI** - `claude-search \"AT-SPI wayland\"` → matching sessions\n3. **Auto-index hook** - Update index on session end or compaction\n\n## Questions\n- Generate summaries via AI or extract heuristically?\n- Index per-project or global?\n- How to handle very long sessions (multiple topics)?\n\n## Value\n- Find past solutions without remembering dates\n- Model reflection: include relevant past sessions in context\n- Replace manual worklogs with auto-generated metadata","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-17T15:56:50.913766392-08:00","updated_at":"2025-12-29T18:35:56.530154004-05:00","closed_at":"2025-12-29T18:35:56.530154004-05:00","close_reason":"Prototype complete: bin/claude-search indexes 122 sessions, searches by keyword. Future: auto-index hook, full-text search, keyword extraction."}
{"id":"skills-6gw","title":"Add artifact provenance to traces","description":"Current: files_created lists paths only.\nProblem: Can't detect regressions or validate outputs.\n\nAdd:\n- Content hash (sha256)\n- File size\n- For modifications: git_diff_summary (files changed, line counts)\n\nExample:\n outputs:\n artifacts:\n - path: docs/worklogs/...\n sha256: abc123...\n size: 1234\n action: created|modified\n\nEnables: diff traces, regression testing, validation.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T19:49:48.654952533-05:00","updated_at":"2025-12-29T13:55:35.827778174-05:00","closed_at":"2025-12-29T13:55:35.827778174-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed."}
{"id":"skills-6jw","title":"spec-review: Add severity labeling to prompts and reviews","description":"Reviews produce flat lists mixing blockers with minor nits. Hard to make decisions.\n\nAdd to prompts:\n- Require severity labels: Blocker / High / Medium / Low\n- Sort output by severity\n- Include impact and likelihood for each issue","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-15T00:23:23.334156366-08:00","updated_at":"2025-12-15T13:00:32.678573181-08:00","closed_at":"2025-12-15T13:00:32.678573181-08:00"}
{"id":"skills-7bu","title":"Add atomic file operations to update scripts","description":"Files affected:\n- skills/update-opencode/scripts/update-nix-file.sh\n- .specify/scripts/bash/update-agent-context.sh\n\nIssues:\n- Uses sed -i which can corrupt on error\n- No rollback mechanism despite creating backups\n- Unsafe regex patterns with complex escaping\n\nFix:\n- Write to temp file, then atomic mv\n- Validate output before replacing original\n- Add rollback on failure\n\nSeverity: MEDIUM","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-24T02:51:02.334416215-05:00","updated_at":"2025-12-24T02:51:02.334416215-05:00"}
{"id":"skills-7s0","title":"Compare STATIC_DATA.md with upstream","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:15:55.193704589-08:00","updated_at":"2025-12-03T20:19:29.659256809-08:00","closed_at":"2025-12-03T20:19:29.659256809-08:00","dependencies":[{"issue_id":"skills-7s0","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:55.195160705-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-7sh","title":"Set up bd-issue-tracking Claude Code skill from beads repo","description":"Install the beads Claude Code skill from https://github.com/steveyegge/beads/tree/main/examples/claude-code-skill\n\nThis skill teaches Claude how to effectively use beads for issue tracking across multi-session coding workflows. It provides strategic guidance on when/how to use beads, not just command syntax.\n\nFiles to install to ~/.claude/skills/bd-issue-tracking/:\n- SKILL.md - Core workflow patterns and decision criteria\n- BOUNDARIES.md - When to use beads vs markdown alternatives\n- CLI_REFERENCE.md - Complete command documentation\n- DEPENDENCIES.md - Relationship types and patterns\n- WORKFLOWS.md - Step-by-step procedures\n- ISSUE_CREATION.md - Quality guidelines\n- RESUMABILITY.md - Making work resumable across sessions\n- STATIC_DATA.md - Using beads as reference databases\n\nCan symlink or copy the files. Restart Claude Code after install.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T17:53:43.254007992-08:00","updated_at":"2025-12-03T20:04:53.416579381-08:00","closed_at":"2025-12-03T20:04:53.416579381-08:00"}
{"id":"skills-8cc","title":"Remove dead code: unused ARGS variable","description":"File: .specify/scripts/bash/create-new-feature.sh\n\nLine 8: ARGS=() declared but never used\nLine 251: export SPECIFY_FEATURE - unclear if used downstream\n\nFix:\n- Remove unused ARGS declaration\n- Verify SPECIFY_FEATURE is used or remove\n\nSeverity: LOW","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-24T02:50:59.332192076-05:00","updated_at":"2025-12-29T18:38:03.48883384-05:00","closed_at":"2025-12-29T18:38:03.48883384-05:00","close_reason":"Invalid: ARGS is used (line 58, 64). SPECIFY_FEATURE is used by common.sh for feature detection. No dead code."}
{"id":"skills-8d4","title":"Compare CLI_REFERENCE.md with upstream","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:15:53.268324087-08:00","updated_at":"2025-12-03T20:17:26.552616779-08:00","closed_at":"2025-12-03T20:17:26.552616779-08:00","dependencies":[{"issue_id":"skills-8d4","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:53.27265681-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-8d9","title":"Add conversational patterns to orch skill","description":"## Context\nThe orch skill currently documents consensus and single-shot chat, but doesn't\nteach agents how to use orch for multi-turn conversations with external AIs.\n\n## Goal\nAdd documentation and patterns for agent-driven conversations where the calling\nagent (Claude Code) orchestrates multi-turn dialogues using orch primitives.\n\n## Patterns to document\n\n### Session-based multi-turn\n```bash\n# Initial query\nRESPONSE=$(orch chat \"Analyze this\" --model claude --format json)\nSESSION=$(echo \"$RESPONSE\" | jq -r .session_id)\n\n# Continue conversation\norch chat \"Elaborate on X\" --model claude --session $SESSION\n\n# Inspect state\norch sessions info $SESSION\norch sessions show $SESSION --last 2 --format text\n```\n\n### Cross-model dialogue\n```bash\n# Get one model's take\nCLAUDE=$(orch chat \"Review this\" --model claude --format json)\nCLAUDE_SAYS=$(echo \"$CLAUDE\" | jq -r '.responses[0].content')\n\n# Ask another model to respond\norch chat \"Claude said: $CLAUDE_SAYS\n\nWhat's your perspective?\" --model gemini\n```\n\n### When to use conversations vs consensus\n- Consensus: quick parallel opinions on a decision\n- Conversation: deeper exploration, follow-up questions, iterative refinement\n\n## Files\n- skills/orch/SKILL.md\n\n## Related\n- orch-c3r: Design: Session introspection for agent-driven conversations (in orch repo)","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-18T19:57:28.201494288-08:00","updated_at":"2025-12-29T15:34:16.254181578-05:00","closed_at":"2025-12-29T15:34:16.254181578-05:00","close_reason":"Added conversational patterns section to orch SKILL.md: sessions, cross-model dialogue, iterative refinement, consensus vs chat guidance."}
{"id":"skills-8ma","title":"worklog skill: remove org-mode references, use markdown instead","description":"The worklog skill currently references org-mode format (.org files) in the template and instructions. Update to use markdown (.md) instead:\n\n1. Update ~/.claude/skills/worklog/templates/worklog-template.org → worklog-template.md\n2. Convert org-mode syntax to markdown (#+TITLE → # Title, * → ##, etc.)\n3. Update skill instructions to reference .md files\n4. Update suggest-filename.sh to output .md extension\n\nContext: org-mode is less widely supported than markdown in tooling and editors.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-31T08:43:55.761429693-05:00","created_by":"dan","updated_at":"2026-01-02T00:13:05.338810905-05:00","closed_at":"2026-01-02T00:13:05.338810905-05:00","close_reason":"Migrated worklog skill from org-mode to markdown. Template, scripts, and SKILL.md updated. Backward compatible with existing .org files."}
{"id":"skills-8v0","title":"Consolidate skill list definitions (flake.nix + ai-skills.nix)","description":"Skill list duplicated in:\n- flake.nix (lines 15-27)\n- modules/ai-skills.nix (lines 8-18)\n\nIssues:\n- Manual sync required when adding skills\n- No validation that referenced skills exist\n\nFix:\n- Single source of truth for skill list\n- Consider generating one from the other\n\nSeverity: MEDIUM","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-24T02:51:14.432158871-05:00","updated_at":"2025-12-24T02:51:14.432158871-05:00"}
{"id":"skills-8y6","title":"Define skill versioning strategy","description":"Git SHA alone is insufficient. Need tuple approach:\n\n- skill_source_rev: git SHA (if available)\n- skill_content_hash: hash of SKILL.md + scripts\n- runtime_ref: flake.lock hash or Nix store path\n\nQuestions to resolve:\n- Do Protos pin to versions (stable but maintenance) or float on latest (risky)?\n- How to handle breaking changes in skills?\n- Record in wisp trace vs proto definition?\n\nFrom consensus: both models flagged versioning instability as high severity.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T19:49:30.839064445-05:00","updated_at":"2025-12-23T20:55:04.439779336-05:00","closed_at":"2025-12-23T20:55:04.439779336-05:00","close_reason":"ADRs revised with orch consensus feedback"}
{"id":"skills-9af","title":"spec-review: Add spike/research task handling","description":"Tasks like 'Investigate X' can linger without clear outcomes.\n\nAdd to REVIEW_TASKS:\n- Flag research/spike tasks\n- Require timebox and concrete outputs (decision record, prototype, risks)\n- Pattern for handling unknowns","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-15T00:23:26.887719136-08:00","updated_at":"2025-12-15T14:08:13.441095034-08:00","closed_at":"2025-12-15T14:08:13.441095034-08:00"}
{"id":"skills-9bc","title":"Investigate pre-compression hook for worklogs","description":"## Revised Understanding\n\nClaude Code already persists full conversation history in `~/.claude/projects/\u003cproject\u003e/\u003csession-id\u003e.jsonl`. Pre-compact hooks aren't needed for data capture.\n\n## Question\nWhat's the ideal workflow for generating worklogs from session data?\n\n## Options\n\n### 1. Post-session script\n- Run after exiting Claude Code\n- Reads most recent session JSONL\n- Generates worklog from conversation content\n- Pro: Async, doesn't interrupt flow\n- Con: May forget to run it\n\n### 2. On-demand slash command\n- `/worklog-from-session` or similar\n- Reads current session's JSONL file\n- Generates worklog with full context\n- Pro: Explicit control\n- Con: Still need to remember\n\n### 3. Pre-compact reminder\n- Hook prints reminder: \"Consider running /worklog\"\n- Doesn't automate, just nudges\n- Pro: Simple, non-intrusive\n- Con: Easy to dismiss\n\n### 4. Async batch processing\n- Process old sessions whenever\n- All data persists in JSONL files\n- Pro: No urgency, can do later\n- Con: Context may be stale\n\n## Data Format\nSession files contain:\n- User messages with timestamp\n- Assistant responses with model info\n- Tool calls and results\n- Git branch, cwd, version info\n\n## Next Steps\n- Decide preferred workflow\n- Build script to parse session JSONL → worklog format","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T14:32:32.568430817-08:00","updated_at":"2025-12-17T15:56:38.864916015-08:00","closed_at":"2025-12-17T15:56:38.864916015-08:00","close_reason":"Pivoted: worklogs may be redundant given full conversation persistence. New approach: make conversations searchable directly."}
{"id":"skills-9cu","title":"ops-review skill","description":"Multi-lens review skill for operational infrastructure (Nix, shell, Docker, CI/CD).\n\nBased on code-review pattern with linter-first hybrid architecture.\n\n## Phases\n- Phase 1: Skeleton + Core Safety (secrets, shell-safety, blast-radius, privilege)\n- Phase 2: Reliability (idempotency, supply-chain, observability)\n- Phase 3: Architecture (nix-hygiene, resilience, orchestration)\n\n## Design\nSee specs/ops-review/plan.md\n\n## Success Criteria\n- Review dotfiles/ and find real issues\n- Review prox-setup/ and find real issues\n- \u003c10% false positive rate on Phase 1\n- Quick mode \u003c30s","status":"closed","priority":1,"issue_type":"epic","created_at":"2026-01-01T16:55:15.772440374-05:00","created_by":"dan","updated_at":"2026-01-02T00:02:23.095920957-05:00","closed_at":"2026-01-02T00:02:23.095920957-05:00","close_reason":"All 10 lenses implemented with orch consensus. Testing delegated to target repos (dotfiles-je5, prox-setup-kqg)."}
{"id":"skills-9cu.1","title":"Create skill skeleton","description":"Create directory structure and base files:\n- skills/ops-review/SKILL.md (workflow, modeled on code-review)\n- skills/ops-review/README.md (user docs)\n- skills/ops-review/lenses/README.md (lens index)\n\nBlocks all lens work.","status":"closed","priority":1,"issue_type":"task","created_at":"2026-01-01T16:55:22.084083175-05:00","created_by":"dan","updated_at":"2026-01-01T17:08:20.384800582-05:00","closed_at":"2026-01-01T17:08:20.384800582-05:00","close_reason":"Created skeleton: SKILL.md, README.md, lenses/README.md","dependencies":[{"issue_id":"skills-9cu.1","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:22.095950548-05:00","created_by":"dan"}]}
{"id":"skills-9cu.10","title":"Lens: resilience","description":"Create resilience.md lens for fault tolerance:\n- Missing timeouts on network calls\n- No retries with backoff\n- Missing circuit breakers\n- No graceful shutdown (SIGTERM)\n- Missing resource limits\n\nBoundary: Owns runtime tolerance, NOT change safety","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-01T16:56:00.876125632-05:00","created_by":"dan","updated_at":"2026-01-02T00:00:31.02324893-05:00","closed_at":"2026-01-02T00:00:31.02324893-05:00","close_reason":"Lens created with orch consensus: added health checks/liveness, DNS caching, storage/logging, retry safety warning","dependencies":[{"issue_id":"skills-9cu.10","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:56:00.878008563-05:00","created_by":"dan"},{"issue_id":"skills-9cu.10","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:56:00.881250755-05:00","created_by":"dan"}]}
{"id":"skills-9cu.11","title":"Lens: orchestration","description":"Create orchestration.md lens for execution ordering:\n- Unclear prerequisites\n- Missing order documentation\n- Circular dependencies\n- Assumed prior state\n- Implicit coupling\n\nMost complex - needs cross-file context","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-01T16:56:01.098528225-05:00","created_by":"dan","updated_at":"2026-01-02T00:02:09.377316231-05:00","closed_at":"2026-01-02T00:02:09.377316231-05:00","close_reason":"Lens created with orch consensus: added shutdown ordering, CI/CD pipelines, job concurrency, thundering herd","dependencies":[{"issue_id":"skills-9cu.11","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:56:01.100559128-05:00","created_by":"dan"},{"issue_id":"skills-9cu.11","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:56:01.104046552-05:00","created_by":"dan"}]}
{"id":"skills-9cu.12","title":"Integration: flake.nix + ai-skills.nix","description":"Add ops-review to deployment:\n- Add to flake.nix availableSkills\n- Update modules/ai-skills.nix for ops lens deployment\n- Deploy to ~/.config/lenses/ops/","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-01T16:56:13.324752872-05:00","created_by":"dan","updated_at":"2026-01-01T18:34:37.960786687-05:00","closed_at":"2026-01-01T18:34:37.960786687-05:00","close_reason":"Added ops-review to flake.nix availableSkills, updated ai-skills.nix with description and lens deployment to ~/.config/lenses/ops/","dependencies":[{"issue_id":"skills-9cu.12","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:56:13.339878541-05:00","created_by":"dan"},{"issue_id":"skills-9cu.12","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:56:13.34278836-05:00","created_by":"dan"}]}
{"id":"skills-9cu.13","title":"Validation: test on dotfiles","description":"Run Phase 1 lenses on ~/proj/dotfiles:\n- Verify findings are real issues\n- Check false positive rate \u003c10%\n- Document any needed lens refinements","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-01T16:56:13.489473975-05:00","created_by":"dan","updated_at":"2026-01-01T20:45:55.525956162-05:00","closed_at":"2026-01-01T20:45:55.525956162-05:00","close_reason":"Tested on dotfiles - found 7 shell-safety issues (SC2155), 1 blast-radius issue (prune without dry-run). Lenses working correctly.","dependencies":[{"issue_id":"skills-9cu.13","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:56:13.490574316-05:00","created_by":"dan"},{"issue_id":"skills-9cu.13","depends_on_id":"skills-9cu.2","type":"blocks","created_at":"2026-01-01T16:56:13.492551051-05:00","created_by":"dan"},{"issue_id":"skills-9cu.13","depends_on_id":"skills-9cu.3","type":"blocks","created_at":"2026-01-01T16:56:13.494453305-05:00","created_by":"dan"},{"issue_id":"skills-9cu.13","depends_on_id":"skills-9cu.4","type":"blocks","created_at":"2026-01-01T16:56:13.496395361-05:00","created_by":"dan"},{"issue_id":"skills-9cu.13","depends_on_id":"skills-9cu.5","type":"blocks","created_at":"2026-01-01T16:56:13.49824655-05:00","created_by":"dan"}]}
{"id":"skills-9cu.14","title":"Validation: test on prox-setup","description":"Run Phase 1 lenses on ~/proj/prox-setup:\n- Verify findings are real issues\n- Check false positive rate \u003c10%\n- Document any needed lens refinements","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-01T16:56:13.676548941-05:00","created_by":"dan","updated_at":"2026-01-01T21:46:34.25998-05:00","closed_at":"2026-01-01T21:46:34.25998-05:00","close_reason":"Reassigned to prox-setup repo - repo teams own their own testing","dependencies":[{"issue_id":"skills-9cu.14","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:56:13.677846482-05:00","created_by":"dan"},{"issue_id":"skills-9cu.14","depends_on_id":"skills-9cu.2","type":"blocks","created_at":"2026-01-01T16:56:13.680528791-05:00","created_by":"dan"},{"issue_id":"skills-9cu.14","depends_on_id":"skills-9cu.3","type":"blocks","created_at":"2026-01-01T16:56:13.683748368-05:00","created_by":"dan"},{"issue_id":"skills-9cu.14","depends_on_id":"skills-9cu.4","type":"blocks","created_at":"2026-01-01T16:56:13.68689222-05:00","created_by":"dan"},{"issue_id":"skills-9cu.14","depends_on_id":"skills-9cu.5","type":"blocks","created_at":"2026-01-01T16:56:13.689241654-05:00","created_by":"dan"}]}
{"id":"skills-9cu.2","title":"Lens: secrets","description":"Create secrets.md lens for credential hygiene:\n- Hardcoded secrets, API keys, tokens\n- SOPS config issues\n- Secrets in logs/error messages\n- Secrets via CLI args\n- Missing encryption\n\nLinter integration: gitleaks patterns","status":"closed","priority":1,"issue_type":"task","created_at":"2026-01-01T16:55:35.394704404-05:00","created_by":"dan","updated_at":"2026-01-01T17:12:01.063844363-05:00","closed_at":"2026-01-01T17:12:01.063844363-05:00","close_reason":"Created secrets.md lens with Nix store, Docker layer, CI masking checks. Reviewed via orch consensus.","dependencies":[{"issue_id":"skills-9cu.2","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:35.400663129-05:00","created_by":"dan"},{"issue_id":"skills-9cu.2","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:55:35.404368195-05:00","created_by":"dan"}]}
{"id":"skills-9cu.3","title":"Lens: shell-safety","description":"Create shell-safety.md lens (shellcheck-backed):\n- Missing set -euo pipefail\n- Unquoted variables (SC2086)\n- Unsafe command substitution\n- Missing error handling\n- Hardcoded paths\n\nLinter integration: shellcheck JSON output","status":"closed","priority":1,"issue_type":"task","created_at":"2026-01-01T16:55:35.596966874-05:00","created_by":"dan","updated_at":"2026-01-01T17:16:27.274701375-05:00","closed_at":"2026-01-01T17:16:27.274701375-05:00","close_reason":"Created shell-safety.md lens with temp file safety, input validation, set -e nuance, guard snippets. Reviewed via orch consensus.","dependencies":[{"issue_id":"skills-9cu.3","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:35.598340159-05:00","created_by":"dan"},{"issue_id":"skills-9cu.3","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:55:35.600733142-05:00","created_by":"dan"}]}
{"id":"skills-9cu.4","title":"Lens: blast-radius","description":"Create blast-radius.md lens for change safety:\n- Destructive ops without confirmation\n- Missing dry-run mode\n- No rollback strategy\n- Bulk ops without batching\n- Missing pre-flight checks\n\nLLM-primary: understanding implications","status":"closed","priority":1,"issue_type":"task","created_at":"2026-01-01T16:55:35.792059661-05:00","created_by":"dan","updated_at":"2026-01-01T17:24:07.972638831-05:00","closed_at":"2026-01-01T17:24:07.972638831-05:00","close_reason":"Created blast-radius.md with targeting/scoping, empty var expansion, env gates, scope in output, mitigation downgrades. Reviewed via orch consensus.","dependencies":[{"issue_id":"skills-9cu.4","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:35.793564277-05:00","created_by":"dan"},{"issue_id":"skills-9cu.4","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:55:35.796234701-05:00","created_by":"dan"}]}
{"id":"skills-9cu.5","title":"Lens: privilege","description":"Create privilege.md lens for least-privilege:\n- Unnecessary sudo/root\n- Containers as root\n- chmod 777 patterns\n- Missing capability drops\n- Docker socket mounting\n- systemd without sandboxing","status":"closed","priority":1,"issue_type":"task","created_at":"2026-01-01T16:55:35.996280533-05:00","created_by":"dan","updated_at":"2026-01-01T18:30:25.980656507-05:00","closed_at":"2026-01-01T18:30:25.980656507-05:00","close_reason":"Created privilege.md with network binding, setuid/setgid, K8s specifics, compensating controls, curl|sudo bash. Reviewed via orch consensus.","dependencies":[{"issue_id":"skills-9cu.5","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:35.999435334-05:00","created_by":"dan"},{"issue_id":"skills-9cu.5","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:55:36.004010491-05:00","created_by":"dan"}]}
{"id":"skills-9cu.6","title":"Lens: idempotency","description":"Create idempotency.md lens for safe re-execution:\n- Scripts that break on re-run\n- Missing existence checks\n- Non-atomic operations\n- Check-then-act race conditions\n- Missing cleanup on failure\n\nBoundary: Owns convergence, NOT rollback or retries","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-01T16:55:49.04397031-05:00","created_by":"dan","updated_at":"2026-01-01T22:01:48.652398594-05:00","closed_at":"2026-01-01T22:01:48.652398594-05:00","close_reason":"Lens created with orch consensus feedback: added optimistic locking, non-deterministic naming, delete idempotency, false positive risks","dependencies":[{"issue_id":"skills-9cu.6","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:49.061027066-05:00","created_by":"dan"},{"issue_id":"skills-9cu.6","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:55:49.065409149-05:00","created_by":"dan"}]}
{"id":"skills-9cu.7","title":"Lens: supply-chain","description":"Create supply-chain.md lens for provenance:\n- Unpinned versions (latest tags)\n- Actions not pinned to SHA\n- Missing flake.lock/SRI hashes\n- Unsigned artifacts\n- Untrusted registries","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-01T16:55:49.317966318-05:00","created_by":"dan","updated_at":"2026-01-01T22:03:26.655269107-05:00","closed_at":"2026-01-01T22:03:26.655269107-05:00","close_reason":"Lens created with orch consensus: added Terraform/Tofu, build-time network access, GH Actions permissions, builtins.fetchTarball","dependencies":[{"issue_id":"skills-9cu.7","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:49.319754113-05:00","created_by":"dan"},{"issue_id":"skills-9cu.7","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:55:49.322943568-05:00","created_by":"dan"}]}
{"id":"skills-9cu.8","title":"Lens: observability","description":"Create observability.md lens for visibility:\n- Silent failures\n- Missing health checks\n- Incomplete metrics\n- Missing structured logging\n- No correlation IDs","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-01T16:55:49.562009474-05:00","created_by":"dan","updated_at":"2026-01-01T22:05:03.351508622-05:00","closed_at":"2026-01-01T22:05:03.351508622-05:00","close_reason":"Lens created with orch consensus: added resource visibility, heartbeats, version/build metadata, log rotation","dependencies":[{"issue_id":"skills-9cu.8","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:55:49.564394694-05:00","created_by":"dan"},{"issue_id":"skills-9cu.8","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:55:49.571005731-05:00","created_by":"dan"}]}
{"id":"skills-9cu.9","title":"Lens: nix-hygiene","description":"Create nix-hygiene.md lens (statix/deadnix-backed):\n- Dead code (unused bindings)\n- Anti-patterns (with lib abuse, IFD)\n- Module boundary violations\n- Overlay issues\n- Missing option types\n\nLinter integration: statix + deadnix JSON","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-01T16:56:00.623672452-05:00","created_by":"dan","updated_at":"2026-01-01T23:58:43.868830539-05:00","closed_at":"2026-01-01T23:58:43.868830539-05:00","close_reason":"Lens created with orch consensus: added lib.mkIf guards, mkDefault/mkForce, reproducibility/purity, build efficiency, expanded false positives","dependencies":[{"issue_id":"skills-9cu.9","depends_on_id":"skills-9cu","type":"parent-child","created_at":"2026-01-01T16:56:00.638729349-05:00","created_by":"dan"},{"issue_id":"skills-9cu.9","depends_on_id":"skills-9cu.1","type":"blocks","created_at":"2026-01-01T16:56:00.643063075-05:00","created_by":"dan"}]}
{"id":"skills-a0x","title":"spec-review: Add traceability requirements across artifacts","description":"Prompts don't enforce spec → plan → tasks linkage. Drift can occur without detection.\n\nAdd:\n- Require trace matrix or linkage in reviews\n- Each plan item should reference spec requirement\n- Each task should reference plan item\n- Flag unmapped items and extra scope","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-15T00:23:25.270581198-08:00","updated_at":"2025-12-15T14:05:48.196356786-08:00","closed_at":"2025-12-15T14:05:48.196356786-08:00"}
{"id":"skills-a23","title":"Update main README to list all 9 skills","description":"Main README.md 'Skills Included' section only lists worklog and update-spec-kit. Repo actually has 9 skills: template, worklog, update-spec-kit, screenshot-latest, niri-window-capture, tufte-press, update-opencode, web-research, web-search.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:14.042397754-08:00","updated_at":"2025-12-28T22:08:02.074758486-05:00","closed_at":"2025-12-28T22:08:02.074758486-05:00","close_reason":"Updated README with table listing all 14 skills (5 deployed, 8 available, 1 development template)","dependencies":[{"issue_id":"skills-a23","depends_on_id":"skills-4yn","type":"blocks","created_at":"2025-11-30T12:01:30.306742184-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-al5","title":"Consider repo-setup-verification skill","description":"The dotfiles repo has a repo-setup-prompt.md verification checklist that could become a skill.\n\n**Source**: ~/proj/dotfiles/docs/repo-setup-prompt.md\n\n**What it does**:\n- Verifies .envrc has use_api_keys and skills loading\n- Checks .skills manifest exists with appropriate skills\n- Optionally checks beads setup\n- Verifies API keys are loaded\n\n**As a skill it could**:\n- Be invoked to audit any repo's agent setup\n- Offer to fix missing pieces\n- Provide consistent onboarding for new repos\n\n**Questions**:\n- Is this better as a skill vs a slash command?\n- Should it auto-fix or just report?\n- Does it belong in skills repo or dotfiles?","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-06T12:38:32.561337354-08:00","updated_at":"2025-12-28T22:22:57.639520516-05:00","closed_at":"2025-12-28T22:22:57.639520516-05:00","close_reason":"Decided: keep as prompt doc in dotfiles, not a skill. Claude can read it when asked. No wrapper benefit, and it's dotfiles-specific setup (not general skill). ai-tools-doctor handles version checking separately."}
{"id":"skills-bcu","title":"Design doc-review skill","description":"# doc-review skill\n\nFight documentation drift with a non-interactive review process that generates patchfiles for human review.\n\n## Problem\n- No consistent documentation system across repos\n- Stale content accumulates\n- Structural inconsistencies (docs not optimized for agents)\n\n## Envisioned Workflow\n\n```bash\n# Phase 1: Generate patches (non-interactive, use spare credits, test models)\ndoc-review scan ~/proj/foo --model claude-sonnet --output /tmp/foo-patches/\n\n# Phase 2: Review patches (interactive session)\ncd ~/proj/foo\nclaude # human reviews patches, applies selectively\n```\n\n## Design Decisions Made\n\n- **Trigger**: Manual invocation (not CI). Use case includes burning extra LLM credits, testing models repeatably.\n- **Source of truth**: Style guide embedded in prompt template. Blessed defaults, overridable per-repo.\n- **Output**: Patchfiles for human review in interactive Claude session.\n- **Chunking**: Based on absolute size, not file count. Logical chunks easy for Claude to review.\n- **Scope detection**: Graph-based discovery starting from README.md or AGENTS.md, not glob-all-markdown.\n\n## Open Design Work\n\n### Agent-Friendly Doc Conventions (needs brainstorming)\nWhat makes docs agent-readable?\n- Explicit context (no \"as mentioned above\")\n- Clear section headers for navigation\n- Self-contained sections\n- Consistent terminology\n- Front-loaded summaries\n- ???\n\n### Prompt Content\nFull design round needed on:\n- What conventions to enforce\n- How to express them in prompt\n- Examples of \"good\" vs \"bad\"\n\n### Graph-Based Discovery\nHow does traversal work?\n- Parse links from README/AGENTS.md?\n- Follow relative markdown links?\n- Depth limit?\n\n## Skill Structure (tentative)\n```\nskills/doc-review/\n├── prompt.md # Core review instructions + style guide\n├── scan.sh # Orchestrates: find docs → invoke claude → emit patches\n└── README.md\n```\n\n## Out of Scope (for now)\n- Cross-repo standardization (broader than skills repo)\n- CI integration\n- Auto-apply without human review","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-04T14:01:43.305653729-08:00","updated_at":"2025-12-04T16:44:03.468118288-08:00","closed_at":"2025-12-04T16:44:03.468118288-08:00","dependencies":[{"issue_id":"skills-bcu","depends_on_id":"skills-1ig","type":"blocks","created_at":"2025-12-04T14:02:17.144414636-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"skills-bcu","depends_on_id":"skills-53k","type":"blocks","created_at":"2025-12-04T14:02:17.164968463-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-be3","title":"Define trace security and redaction policy","description":"Wisps will leak secrets without explicit policy.\n\nRequired:\n- Default-deny for env vars (allowlist: PROJECT, USER, etc.)\n- Redaction rules for sensitive fields\n- No file contents by default\n- Classification field: internal|secret|public\n\nImplementation:\n- redact: [\"env.AWS_SECRET_ACCESS_KEY\", \"inputs.token\"]\n- Sanitization before writing to disk\n- Block elevation if classification=secret\n\nFrom consensus: both models flagged as medium-high severity.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T19:49:31.041661947-05:00","updated_at":"2025-12-23T20:55:04.446363188-05:00","closed_at":"2025-12-23T20:55:04.446363188-05:00","close_reason":"ADRs revised with orch consensus feedback"}
{"id":"skills-bvz","title":"spec-review: Add Definition of Ready checklists for each phase","description":"'Ready for /speckit.plan' and similar are underspecified.\n\nAdd concrete checklists:\n- Spec ready for planning: problem statement, goals, constraints, acceptance criteria, etc.\n- Plan ready for tasks: milestones, risks, dependencies, test strategy, etc.\n- Tasks ready for bd: each task has acceptance criteria, dependencies explicit, etc.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-15T00:23:24.877531852-08:00","updated_at":"2025-12-15T14:05:26.880419097-08:00","closed_at":"2025-12-15T14:05:26.880419097-08:00"}
{"id":"skills-bww","title":"Benchmark AT-SPI overhead and coverage","description":"## Goal\nMeasure AT-SPI's runtime overhead and coverage across apps.\n\n## Prerequisites\n- Enable `services.gnome.at-spi2-core.enable = true` in NixOS\n- Set `QT_LINUX_ACCESSIBILITY_ALWAYS_ON=1` for Qt apps\n- Rebuild and re-login\n\n## Overhead benchmarks\n1. **Startup time**: App launch with/without AT-SPI\n2. **Memory**: RSS delta with AT-SPI enabled\n3. **CPU**: Idle CPU with AT-SPI bus running\n4. **UI latency**: Input-to-paint latency (if measurable)\n\n## Coverage audit\nFor each app, document:\n- Does it expose accessibility tree?\n- How complete is the tree? (all elements vs partial)\n- Are coordinates accurate?\n- Are element types/roles correct?\n\n### Apps to test\n- [ ] Firefox\n- [ ] Ghostty terminal\n- [ ] Nautilus/file manager\n- [ ] VS Code / Electron app\n- [ ] A Qt app (if any installed)\n\n## Query benchmarks\n- Time to enumerate all elements in a window\n- Time to find element by role/name\n- Memory overhead of pyatspi queries\n\n## Depends on\n- skills-pdg (Enable AT-SPI for UI tree access)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-17T14:13:21.599259773-08:00","updated_at":"2025-12-17T14:13:21.599259773-08:00","dependencies":[{"issue_id":"skills-bww","depends_on_id":"skills-pdg","type":"blocks","created_at":"2025-12-17T14:13:41.633210539-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-cc0","title":"spec-review: Add anti-hallucination constraints to prompts","description":"Models may paraphrase and present as quotes, or invent requirements/risks not in the doc.\n\nAdd:\n- 'Quotes must be verbatim'\n- 'Do not assume technologies/constraints not stated'\n- 'If missing info, list as open questions rather than speculating'","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-15T00:23:26.045478292-08:00","updated_at":"2025-12-15T14:07:19.556888057-08:00","closed_at":"2025-12-15T14:07:19.556888057-08:00"}
{"id":"skills-cjx","title":"Create spec-review skill for orch + spec-kit integration","description":"A new skill that integrates orch multi-model consensus with spec-kit workflows.\n\n**Purpose**: Use different models/temps/stances to review spec-kit artifacts before phase transitions.\n\n**Proposed commands**:\n- /spec-review.spec - Critique current spec for completeness, ambiguity, gaps\n- /spec-review.plan - Evaluate architecture decisions in plan\n- /spec-review.gate - Go/no-go consensus before phase transition\n\n**Structure**:\n```\nskills/spec-review/\n├── SKILL.md\n├── commands/\n│ ├── spec.md\n│ ├── plan.md\n│ └── gate.md\n└── prompts/\n └── ...\n```\n\n**Key design points**:\n- Finds spec/plan files from current branch or specs/ directory\n- Invokes orch with appropriate prompt, models, stances\n- Presents consensus/critique results\n- AI reviewing AI is valuable redundancy (different models/temps/stances)\n\n**Dependencies**:\n- orch CLI must be available (blocked on dotfiles-3to)\n- spec-kit project structure conventions","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-14T17:50:13.22879874-08:00","updated_at":"2025-12-15T00:10:23.122342449-08:00","closed_at":"2025-12-15T00:10:23.122342449-08:00"}
{"id":"skills-cnc","title":"Add direnv helper for per-repo skill deployment","description":"Create sourceable helper script and documentation for the standard per-repo skill deployment pattern using direnv + nix build.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-30T12:19:20.71056749-08:00","updated_at":"2025-11-30T12:37:47.22638278-08:00","closed_at":"2025-11-30T12:37:47.22638278-08:00"}
{"id":"skills-czz","title":"Research OpenCode agents for skill integration","description":"DEPLOYMENT.md:218 has TODO to research OpenCode agents. Need to understand how Build/Plan/custom agents work and whether skills need agent-specific handling.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:24.855701141-08:00","updated_at":"2025-12-28T20:48:58.373191479-05:00","closed_at":"2025-12-28T20:48:58.373191479-05:00","close_reason":"Researched OpenCode agents - documented in DEPLOYMENT.md. Skills deploy globally, permissions control per-agent access."}
{"id":"skills-d6r","title":"Design: orch as local agent framework","description":"# Orch Evolution: From Consensus Tool to Agent Framework\n\n## Current State\n- `orch consensus` - multi-model queries\n- `orch chat` - single model queries\n- No state, no pipelines, no retries\n\n## Proposed Extensions\n\n### Pipeline Mode\n```bash\norch pipeline config.yaml\n```\nWhere config.yaml defines:\n- Stages (triage → specialists → verify)\n- Routing logic (if triage finds X, run specialist Y)\n- Retry policy\n\n### Evaluate Mode (doc-review specific)\n```bash\norch evaluate doc.md --rubrics=1,4,7 --output=patches/\n```\n- Applies specific rubrics to document\n- Outputs JSON or patches\n\n### Parallel Mode\n```bash\norch parallel --fan-out=5 --template=\"evaluate {rubric}\" rubrics.txt\n```\n- Fan-out to multiple parallel calls\n- Aggregate results\n\n## Open Questions\n1. Does this belong in orch or a separate tool?\n2. Should orch pipelines be YAML-defined or code-defined?\n3. How does this relate to Claude Code Task subagents?\n4. What's the minimal viable extension?\n\n## Context\nEmerged from doc-review skill design - need multi-pass evaluation but don't want to adopt heavy framework (LangGraph, etc.)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-04T16:06:56.681282678-08:00","updated_at":"2025-12-04T16:44:08.652185174-08:00","closed_at":"2025-12-04T16:44:08.652185174-08:00"}
{"id":"skills-d87","title":"orch skill is documentation-only, needs working invocation mechanism","description":"The orch skill provides SKILL.md documentation but no working invocation mechanism.\n\n**Resolution**: Install orch globally via home-manager (dotfiles-3to). The skill documents a system tool, doesn't need to bundle it.\n\n**Blocked by**: dotfiles-3to (Add orch CLI to home-manager packages)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-14T11:54:03.157039164-08:00","updated_at":"2025-12-16T18:45:24.39235833-08:00","closed_at":"2025-12-16T18:45:24.39235833-08:00","close_reason":"Updated docs to use globally installed orch CLI"}
{"id":"skills-dnm","title":"Refactor deploy-skill.sh: dedupe injection calls","description":"File: bin/deploy-skill.sh (lines 112-189)\n\nIssues:\n- Three nearly-identical inject_nix_config() calls\n- Only difference is config block content and target file\n- Repeated pattern bloats file\n\nFix:\n- Parameterize inject_nix_config() better\n- Or create config-specific injection functions\n- Reduce duplication\n\nSeverity: MEDIUM","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-24T02:51:01.855452762-05:00","updated_at":"2026-01-03T12:02:48.140656044-08:00","closed_at":"2026-01-03T12:02:48.140656044-08:00","close_reason":"Refactored injection logic using inject_home_file helper, deduping Claude, OpenCode and Antigravity blocks."}
{"id":"skills-dpw","title":"orch: add command to show available/configured models","description":"## Problem\n\nWhen trying to use orch, you have to trial-and-error through models to find which ones have API keys configured. Each failure looks like:\n\n```\nError: GEMINI_API_KEY not set. Required for Google Gemini models.\n```\n\nNo way to know upfront which models are usable.\n\n## Proposed Solution\n\nAdd `orch models` or `orch status` command:\n\n```bash\n$ orch models\nAvailable models:\n ✓ flash (GEMINI_API_KEY set)\n ✓ gemini (GEMINI_API_KEY set)\n ✗ deepseek (OPENROUTER_KEY not set)\n ✗ qwen (OPENROUTER_KEY not set)\n ✓ gpt (OPENAI_API_KEY set)\n```\n\nOr at minimum, on failure suggest alternatives:\n```\nError: GEMINI_API_KEY not set. Try --model gpt or --model deepseek instead.\n```\n\n## Context\n\nHit this while trying to brainstorm with high-temp gemini - had to try 4 models before realizing none were configured in this environment.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-04T14:10:07.069103175-08:00","updated_at":"2025-12-04T14:11:05.49122538-08:00","closed_at":"2025-12-04T14:11:05.49122538-08:00"}
{"id":"skills-e8h","title":"Investigate waybar + niri integration improvements","description":"Look into waybar configuration and niri compositor integration.\n\nPotential areas:\n- Waybar modules for niri workspaces\n- Status indicators\n- Integration with existing niri-window-capture skill\n- Custom scripts in pkgs/waybar-scripts\n\nRelated: dotfiles has home/waybar.nix (196 lines) and pkgs/waybar-scripts/","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T20:11:23.115445797-05:00","created_by":"dan","updated_at":"2025-12-28T20:37:16.465731945-05:00","closed_at":"2025-12-28T20:37:16.465731945-05:00","close_reason":"Moved to dotfiles repo - waybar config lives there"}
{"id":"skills-e96","title":"skill: semantic-grep using LSP","description":"Use workspace/symbol, documentSymbol, and references instead of ripgrep.\n\nExample: 'Find all places where we handle User objects but only where we modify the email field directly'\n- LSP references finds all User usages\n- Filter by AST analysis for .email assignments\n- Return hit list for bead or further processing\n\nBetter than regex for Go interfaces, Rust traits, TS types.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-24T02:29:57.119983837-05:00","updated_at":"2025-12-24T02:29:57.119983837-05:00","dependencies":[{"issue_id":"skills-e96","depends_on_id":"skills-gga","type":"blocks","created_at":"2025-12-24T02:30:06.632906383-05:00","created_by":"daemon"}]}
{"id":"skills-ebh","title":"Compare bd-issue-tracking skill files with upstream","description":"Fetch upstream beads skill files and compare with our condensed versions to identify differences","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:14:07.886535859-08:00","updated_at":"2025-12-03T20:19:37.579815337-08:00","closed_at":"2025-12-03T20:19:37.579815337-08:00"}
{"id":"skills-ebl","title":"Benchmark vision model UI understanding","description":"## Goal\nMeasure how well vision models can answer UI questions from screenshots.\n\n## Test cases\n1. **Element location**: \"Where is the Save button?\" → coordinates\n2. **Element identification**: \"What buttons are visible?\" → list\n3. **State detection**: \"Is the checkbox checked?\" → boolean\n4. **Text extraction**: \"What does the error message say?\" → text\n5. **Layout understanding**: \"What's in the sidebar?\" → structure\n\n## Metrics\n- Accuracy: Does the answer match ground truth?\n- Precision: How close are coordinates to actual element centers?\n- Latency: Time from query to response\n- Cost: Tokens consumed per query\n\n## Prompt engineering questions\n- Does adding a grid overlay help coordinate precision?\n- What prompt format gives most actionable coordinates?\n- Can we get bounding boxes vs point coordinates?\n\n## Comparison baseline\n- Manual annotation of test screenshots\n- AT-SPI data (once enabled) as ground truth\n\n## Depends on\n- Test screenshots from real apps\n- Ground truth annotations","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T14:13:10.038933798-08:00","updated_at":"2025-12-29T15:26:19.822655148-05:00","closed_at":"2025-12-29T15:26:19.822655148-05:00","close_reason":"Benchmark complete. Vision models excellent for semantic understanding, approximate for coordinates. Recommend hybrid AT-SPI + vision. See docs/research/vision-ui-benchmark-2025-12-29.md"}
{"id":"skills-f2p","title":"Skills + Molecules Integration","description":"Integrate skills with beads molecules system.\n\nDesign work tracked in dotfiles (dotfiles-jjb).\n\nComponents:\n- Checklist support (lightweight skills)\n- Audit integration (bd audit for skill execution)\n- Skill frontmatter for triggers/tracking\n- Proto packaging alongside skills\n\nSee: ~/proj/dotfiles ADR work","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-23T17:58:55.999438985-05:00","updated_at":"2025-12-23T19:22:38.577280129-05:00","closed_at":"2025-12-23T19:22:38.577280129-05:00","close_reason":"Superseded by skills-4u0 (migrated from dotfiles)","dependencies":[{"issue_id":"skills-f2p","depends_on_id":"skills-vpy","type":"blocks","created_at":"2025-12-23T17:59:17.976956454-05:00","created_by":"daemon"},{"issue_id":"skills-f2p","depends_on_id":"skills-u3d","type":"blocks","created_at":"2025-12-23T17:59:18.015216054-05:00","created_by":"daemon"}]}
{"id":"skills-fo3","title":"Compare WORKFLOWS.md with upstream","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:15:54.283175561-08:00","updated_at":"2025-12-03T20:19:28.897037199-08:00","closed_at":"2025-12-03T20:19:28.897037199-08:00","dependencies":[{"issue_id":"skills-fo3","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:54.286009672-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-fvc","title":"Code Review: {{target}}","description":"Multi-lens code review workflow for {{target}}.\n\n## Philosophy\nThe LLM stays in the loop at every step - this is agent-assisted review, not automated parsing. The agent applies judgment about what's worth filing, how to prioritize, and what context to include.\n\n## Variables\n- target: File or directory to review\n\n## Workflow\n1. Explore codebase to find candidates (if target is directory)\n2. Run lenses via orch consensus for multi-model perspective\n3. Analyze findings - LLM synthesizes across lenses and models\n4. File issues with judgment - group related, set priorities, add context\n5. Summarize for digest\n\n## Lenses Available\n- bloat: size, complexity, SRP violations\n- smells: readability, naming, control flow\n- dead-code: unused, unreachable, obsolete\n- redundancy: duplication, YAGNI, parallel systems","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-25T10:10:57.652098447-05:00","updated_at":"2025-12-26T23:22:41.408582818-05:00","closed_at":"2025-12-26T23:22:41.408582818-05:00","close_reason":"Replaced by /code-review skill","labels":["template"]}
{"id":"skills-fvc.1","title":"Run bloat lens on {{target}}","description":"Run bloat review lens via orch:\n\n```bash\norch consensus \"$(cat ~/.config/lenses/bloat.md)\" flash gemini --file {{target}} --mode open\n```\n\nLook for: file size, function length, complexity, SRP violations.\nRecord findings for later filing.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T10:13:59.789715667-05:00","updated_at":"2025-12-26T23:22:41.416754154-05:00","closed_at":"2025-12-26T23:22:41.416754154-05:00","close_reason":"Replaced by /code-review skill","dependencies":[{"issue_id":"skills-fvc.1","depends_on_id":"skills-fvc","type":"parent-child","created_at":"2025-12-25T10:13:59.80248308-05:00","created_by":"daemon"}]}
{"id":"skills-fvc.2","title":"Run smells lens on {{target}}","description":"Run smells review lens via orch:\n\n```bash\norch consensus \"$(cat ~/.config/lenses/smells.md)\" flash gemini --file {{target}} --mode open\n```\n\nLook for: naming issues, control flow smells, data smells, structural issues.\nRecord findings for later filing.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T10:16:13.977562568-05:00","updated_at":"2025-12-26T23:22:41.423564011-05:00","closed_at":"2025-12-26T23:22:41.423564011-05:00","close_reason":"Replaced by /code-review skill","dependencies":[{"issue_id":"skills-fvc.2","depends_on_id":"skills-fvc","type":"parent-child","created_at":"2025-12-25T10:16:13.989662453-05:00","created_by":"daemon"}]}
{"id":"skills-fvc.3","title":"Run dead-code lens on {{target}}","description":"Run dead-code review lens via orch:\n\n```bash\norch consensus \"$(cat ~/.config/lenses/dead-code.md)\" flash gemini --file {{target}} --mode open\n```\n\nLook for: zombie code, unreachable paths, obsolete shims, import cruft.\nRecord findings for later filing.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T10:16:17.522715411-05:00","updated_at":"2025-12-26T23:22:41.432104796-05:00","closed_at":"2025-12-26T23:22:41.432104796-05:00","close_reason":"Replaced by /code-review skill","dependencies":[{"issue_id":"skills-fvc.3","depends_on_id":"skills-fvc","type":"parent-child","created_at":"2025-12-25T10:16:17.53423496-05:00","created_by":"daemon"}]}
{"id":"skills-fvc.4","title":"Run redundancy lens on {{target}}","description":"Run redundancy review lens via orch:\n\n```bash\norch consensus \"$(cat ~/.config/lenses/redundancy.md)\" flash gemini --file {{target}} --mode open\n```\n\nLook for: duplication, parallel systems, YAGNI violations, consolidation opportunities.\nRecord findings for later filing.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T10:16:21.94274481-05:00","updated_at":"2025-12-26T23:22:41.439539488-05:00","closed_at":"2025-12-26T23:22:41.439539488-05:00","close_reason":"Replaced by /code-review skill","dependencies":[{"issue_id":"skills-fvc.4","depends_on_id":"skills-fvc","type":"parent-child","created_at":"2025-12-25T10:16:21.956965459-05:00","created_by":"daemon"}]}
{"id":"skills-fvc.5","title":"Analyze and file findings as beads","description":"Review all lens findings and file actionable items as beads in the TARGET REPO.\n\n## LLM Judgment Required\nThis is NOT mechanical parsing. The agent should:\n\n1. **Synthesize across lenses** - same issue may appear in bloat + smells\n2. **Prioritize by impact** - P2 for blocking issues, P3 for cleanup\n3. **Group related findings** - one issue for 'split this file' vs 5 separate issues\n4. **Add context** - why it matters, suggested approach, quick-win vs big-refactor\n5. **Skip noise** - LOW severity findings unless pattern emerges\n\n## Filing Pattern\n```bash\ncd \u003ctarget-repo\u003e\nbd create --title=\"refactor: \u003cclear action\u003e\" --type=task --priority=\u003c2|3\u003e --body=\"\u003ccontext\u003e\n\nFound by \u003clens\u003e review.\"\n```\n\n## Key Questions\n- Is this worth someone's time to fix?\n- Can related findings be grouped into one actionable issue?\n- What's the right priority given the codebase context?","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T10:16:34.288221353-05:00","updated_at":"2025-12-26T23:22:41.451111869-05:00","closed_at":"2025-12-26T23:22:41.451111869-05:00","close_reason":"Replaced by /code-review skill","dependencies":[{"issue_id":"skills-fvc.5","depends_on_id":"skills-fvc","type":"parent-child","created_at":"2025-12-25T10:16:34.303313556-05:00","created_by":"daemon"}]}
{"id":"skills-fvc.6","title":"Summarize review findings","description":"Create summary of code review findings for {{target}}:\n\n- Total findings by severity (HIGH/MED/LOW)\n- Top issues by category\n- Recommendations for immediate action\n- Technical debt assessment\n\nThis summary will become the squash digest.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T10:16:34.590409022-05:00","updated_at":"2025-12-26T23:22:41.459279583-05:00","closed_at":"2025-12-26T23:22:41.459279583-05:00","close_reason":"Replaced by /code-review skill","dependencies":[{"issue_id":"skills-fvc.6","depends_on_id":"skills-fvc","type":"parent-child","created_at":"2025-12-25T10:16:34.591813242-05:00","created_by":"daemon"}]}
{"id":"skills-fvc.7","title":"Explore {{target}} for review candidates","description":"If {{target}} is a directory, explore to find files worth reviewing.\n\n## For Bloat Lens\n- Find files over 300 lines (warning) or 500 lines (critical)\n- Find functions over 50 lines\n- Identify files with multiple responsibilities\n\n## For Other Lenses\n- Sample representative files from different modules\n- Prioritize high-traffic code over rarely-used\n\n## Output\nList of specific files to run through lenses, prioritized by likely issues.\n\nSkip if {{target}} is already a specific file.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-26T01:49:18.377427063-05:00","updated_at":"2025-12-26T23:22:41.465019112-05:00","closed_at":"2025-12-26T23:22:41.465019112-05:00","close_reason":"Replaced by /code-review skill","dependencies":[{"issue_id":"skills-fvc.7","depends_on_id":"skills-fvc","type":"parent-child","created_at":"2025-12-26T01:49:18.383625871-05:00","created_by":"daemon"}]}
{"id":"skills-fvx","title":"use-skills.sh: stderr from nix build corrupts symlinks when repo is dirty","description":"In use-skills.sh, the line:\n\n```bash\nout=$(nix build --print-out-paths --no-link \"${SKILLS_REPO}#${skill}\" 2\u003e\u00261) || {\n```\n\nThe `2\u003e\u00261` merges stderr into stdout. When the skills repo is dirty, nix emits a warning to stderr which gets captured into $out and used as the symlink target.\n\nResult: symlinks like:\n```\norch -\u003e warning: Git tree '/home/dan/proj/skills' is dirty\n/nix/store/j952hgxixifscafb42vmw9vgdphi1djs-ai-skill-orch\n```\n\nFix: redirect stderr to /dev/null or filter it out before creating symlink.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T11:54:03.06502295-08:00","updated_at":"2025-12-14T11:59:25.472044754-08:00","closed_at":"2025-12-14T11:59:25.472044754-08:00"}
{"id":"skills-gas","title":"spec-review: File discovery is brittle, can pick wrong file silently","description":"The fallback `find ... | head -1` is non-deterministic and can select wrong spec/plan/tasks file without user noticing. Branch names with `/` also break path construction.\n\nFixes:\n- Fail fast if expected file missing\n- Print chosen file path before proceeding\n- Require explicit confirmation if falling back\n- Handle branch names with slashes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-15T00:23:22.762045913-08:00","updated_at":"2025-12-15T00:46:16.231199231-08:00","closed_at":"2025-12-15T00:46:16.231199231-08:00"}
{"id":"skills-gga","title":"Configure Claude Code LSP integration","description":"Claude Code now has LSP (Language Server Protocol) integration that provides semantic code understanding.\n\n## Key Features\n- Go to Definition - Jump to symbol declarations\n- Find References - Locate all usages (safe refactoring) \n- Hover/Type Info - Get signatures, docstrings, types\n- Diagnostics - See compiler errors/warnings directly\n\n## Setup Required\n1. Enable via env var: ENABLE_LSP_TOOL=1\n2. Install language servers on PATH:\n - TypeScript: typescript-language-server\n - Python: pyright or python-lsp-server\n - Go: gopls\n - Rust: rust-analyzer\n - Nix: nil or nixd\n\n3. Optional: MCP adapter like cclsp for robust AI→LSP bridging\n\n## Tasks\n- [ ] Add language servers to Nix packages\n- [ ] Set ENABLE_LSP_TOOL=1 in shell environment\n- [ ] Test with representative projects\n- [ ] Consider creating an LSP skill documenting available servers\n\n## References\n- Discovered via orch consensus with sonar, flash-or, glm\n- Related to skills+molecules integration (semantic code understanding for traces)","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-24T02:16:40.510669749-05:00","updated_at":"2025-12-24T23:33:58.635002347-05:00","closed_at":"2025-12-24T23:33:58.635002347-05:00","close_reason":"LSP servers deployed (gopls, pyright, typescript-language-server, rust-analyzer, nil, elixir-ls); ENABLE_LSP_TOOL=1 in sessionVariables; requires new session to test"}
{"id":"skills-gq9","title":"Define structured skill reference schema","description":"Replace simple skill: string with structured object.\n\nCurrent (too weak):\n skill: worklog\n\nProposed:\n skill:\n id: worklog\n ref: \"git+file://...#worklog@abc123\"\n inputs:\n session: \"{{session}}\"\n expects:\n files: [\"docs/worklogs/{{session}}.org\"]\n\nFrom orch consensus: both GPT and Gemini flagged this as critical gap.\nNo mechanism to pass args from molecule to skill.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T19:49:30.529899123-05:00","updated_at":"2025-12-28T22:46:28.371352259-05:00","closed_at":"2025-12-28T22:46:28.371352259-05:00","close_reason":"Deferred: structured schema was for molecule→skill integration. Current approach (agent reads SKILL.md directly) works well. Skills as entrypoints are simpler than protos. Revisit if programmatic workflows become active.","dependencies":[{"issue_id":"skills-gq9","depends_on_id":"skills-oes","type":"blocks","created_at":"2025-12-23T19:50:10.337111856-05:00","created_by":"daemon"},{"issue_id":"skills-gq9","depends_on_id":"skills-8y6","type":"blocks","created_at":"2025-12-23T19:50:10.388301727-05:00","created_by":"daemon"}]}
{"id":"skills-gvj","title":"Orch-in-the-Middle: LSP proxy for multi-model refactors","description":"Write an LSP proxy (Go/Rust) that:\n- Intercepts rename/code-action requests from editor\n- Sends to Orch for multi-model proposals\n- Validates proposals against real headless LSP\n- Returns winning WorkspaceEdit to editor\n\nGet consensus refactoring inside VS Code/Neovim by configuring LSP server path in home-manager.","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-24T02:29:56.623189042-05:00","updated_at":"2025-12-29T14:37:35.360129462-05:00","closed_at":"2025-12-29T14:37:35.360129462-05:00","close_reason":"Parked: waiting on gastown (Steve Yegge's orchestration layer for beads). Revisit when gastown lands."}
{"id":"skills-h9f","title":"spec-review: Balance negativity bias in prompts","description":"'Be critical' and 'devil's advocate' can bias toward over-flagging without acknowledging what's good.\n\nAdd:\n- 'List top 3 strongest parts of the document'\n- 'Call out where document is sufficiently clear/testable'\n- Categorize :against concerns as confirmed/plausible/rejected","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-15T00:23:26.418087998-08:00","updated_at":"2025-12-15T14:07:39.520818417-08:00","closed_at":"2025-12-15T14:07:39.520818417-08:00"}
{"id":"skills-hgm","title":"Add tests for agent file update logic","description":"File: .specify/scripts/bash/update-agent-context.sh (lines 360-499)\n\nCritical logic with NO test coverage:\n- Malformed agent files (missing sections)\n- Multiple section headers on same line\n- Empty file handling\n- Timestamp update verification\n- State machine correctness\n\nRisk: HIGH - corrupts agent context files on failure\n\nFix:\n- Create test fixtures for various file states\n- Test each state transition\n- Verify idempotency\n\nSeverity: HIGH","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T02:51:00.793493549-05:00","updated_at":"2026-01-02T02:12:09.368531967-05:00","closed_at":"2026-01-02T02:12:09.368531967-05:00","close_reason":"33 tests added covering all major code paths. Also fixed bug where Recent Changes section was skipped when preceded by Active Technologies."}
{"id":"skills-hh2","title":"skill: rename_symbol with LSP + validation","description":"Skill that performs safe renames:\n1. Uses LSP textDocument/rename\n2. Runs formatters\n3. Checks LSP diagnostics post-rename\n4. Opens bead if errors remain\n5. Updates doc references using hover/signatureHelp\n\nInput: new name, scope. Output: clean rename or bead with issues.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-24T02:29:56.87156069-05:00","updated_at":"2025-12-24T02:29:56.87156069-05:00","dependencies":[{"issue_id":"skills-hh2","depends_on_id":"skills-gga","type":"blocks","created_at":"2025-12-24T02:30:06.583813579-05:00","created_by":"daemon"}]}
{"id":"skills-hhz","title":"Add doc-review skill","description":"Create skill for doc-review CLI tool (~/proj/doc-review). Tool lints markdown docs for AI agent consumption using Vale + LLM hybrid architecture. Needs: 1) flake.nix in doc-review project, 2) skill SKILL.md, 3) register in availableSkills","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T11:24:41.321478346-05:00","created_by":"dan","updated_at":"2025-12-31T00:00:30.74314365-05:00","closed_at":"2025-12-31T00:00:30.74314365-05:00","close_reason":"doc-review skill created in skills/doc-review/SKILL.md"}
{"id":"skills-hin","title":"ADR: Skills and Molecules Integration Design","description":"Write Architecture Decision Record documenting:\n- Current state (skills via Nix/direnv, molecules via beads)\n- Decision to link via skill: references\n- Wisp trace format spec\n- Elevation pipeline design\n- Anti-patterns to avoid\n\nLocation: docs/adr/001-skills-molecules-integration.md\n\nMigrated from dotfiles-dn8 (was in_progress).\n\n## Current State\n- ADR-001 drafted (high-level integration)\n- ADR-002, 003, 004 drafted and revised (manifest, versioning, security)\n- Orch consensus feedback incorporated\n\n## Parked\nDeferring finalization until we see Steve Yegge's new orchestration work and how it might inform our design.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T19:20:47.568903148-05:00","updated_at":"2025-12-28T23:27:42.117722575-05:00","closed_at":"2025-12-28T23:27:42.117722575-05:00","close_reason":"Parked: ADR updated to 'Parked' status. Current simpler approach (skills as standalone, agent judgment) works well. Molecules not actively used. Revisit when orchestration needs grow."}
{"id":"skills-idb","title":"Handle concurrency and multi-agent execution","description":"Not addressed in ADR. Questions:\n\n- What happens when two agents run same skill on same mol step?\n- How to handle partial failures and resumptions?\n- Trace merging: append-only log vs latest-wins?\n\nNeeds:\n- execution_id and parent_execution_id in traces\n- Step completion idempotency declaration\n- Define how multiple traces attach to one mol node\n\nCan defer until basic integration works.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-23T19:49:59.608603168-05:00","updated_at":"2025-12-29T14:37:35.350225933-05:00","closed_at":"2025-12-29T14:37:35.350225933-05:00","close_reason":"Parked: waiting on gastown (Steve Yegge's orchestration layer for beads). Revisit when gastown lands."}
{"id":"skills-j2a","title":"worklog: consolidate git commands into extract-metrics.sh","description":"Context Gathering section has raw git commands, but extract-metrics.sh also exists. Feature envy - split logic. Move all git context gathering into the script, skill makes single call. Found by smells lens review.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T02:03:16.478103649-05:00","updated_at":"2025-12-27T10:11:48.158176684-05:00","closed_at":"2025-12-27T10:11:48.158176684-05:00","close_reason":"Closed"}
{"id":"skills-jbo","title":"Skills: verify symbols via LSP before suggesting","description":"Inversion: let LSP answer facts, let models answer strategy.\n\nBefore Claude suggests using a function/type:\n- Verify existence via workspace/symbol or go-to-definition\n- If not found, propose alternatives that ARE found\n- Gather definition, references, inferred types, diagnostics as context\n\nReduces hallucinated APIs and grounds patches in reality.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-24T02:29:56.391182872-05:00","updated_at":"2025-12-24T02:29:56.391182872-05:00","dependencies":[{"issue_id":"skills-jbo","depends_on_id":"skills-gga","type":"blocks","created_at":"2025-12-24T02:30:06.529604354-05:00","created_by":"daemon"}]}
{"id":"skills-jeb","title":"Define wisp execution trace format","description":"Design structured format for skill execution traces in wisps:\n- skill_version (git SHA + flake hash)\n- inputs (context refs, env vars)\n- tool_calls [{cmd, args, exit_code, duration}]\n- checkpoints [{step, summary, timestamp}]\n- outputs (file diffs or refs)\n\nEnable: replay, diff traces, regression testing\n\nMigrated from dotfiles-ub9.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T19:20:57.896088397-05:00","updated_at":"2025-12-29T13:55:35.797116947-05:00","closed_at":"2025-12-29T13:55:35.797116947-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed.","dependencies":[{"issue_id":"skills-jeb","depends_on_id":"skills-hin","type":"blocks","created_at":"2025-12-23T19:21:39.588011474-05:00","created_by":"dan"},{"issue_id":"skills-jeb","depends_on_id":"skills-gq9","type":"blocks","created_at":"2025-12-23T19:50:10.069841366-05:00","created_by":"daemon"},{"issue_id":"skills-jeb","depends_on_id":"skills-be3","type":"blocks","created_at":"2025-12-23T19:50:10.117400312-05:00","created_by":"daemon"},{"issue_id":"skills-jeb","depends_on_id":"skills-ty7","type":"blocks","created_at":"2025-12-23T19:50:10.163656807-05:00","created_by":"daemon"},{"issue_id":"skills-jeb","depends_on_id":"skills-6gw","type":"blocks","created_at":"2025-12-23T19:50:10.202702536-05:00","created_by":"daemon"}]}
{"id":"skills-kg7","title":"Desktop automation for Wayland/niri","description":"Explore and implement desktop automation solutions for Wayland (niri compositor).\n\n## The Seeing Problem\n\nHow can an AI agent understand what's on screen?\n\n### Layers (bottom to top)\n1. **Window awareness** - what's open, app_id, title → niri IPC ✅\n2. **Window geometry** - size, position, monitor → niri IPC ✅\n3. **Pixel capture** - screenshots → niri screenshot-window ✅\n4. **Understanding** - UI elements, coordinates, semantics → **GAP**\n\n### Two paths to understanding (layer 4)\n\n**Path A: AT-SPI (structured)**\n- Pros: precise coordinates, semantic element types, states\n- Cons: runtime overhead, requires NixOS config, app compliance varies\n- Coverage: GTK ✅, Qt (with env var), Electron ❓\n\n**Path B: Vision model (visual)**\n- Pros: universal (works on any pixels), no system config needed\n- Cons: API latency, token cost, coordinate precision unclear\n- Coverage: anything visible ✅\n\n### Hybrid approach\nRun both, benchmark tradeoffs:\n- AT-SPI overhead vs query precision\n- Vision model latency/cost vs coverage\n- When to use which (or both for validation)\n\n## What we have\n- niri-window-capture skill (screenshots, window list)\n- niri IPC for window/monitor geometry\n\n## Context\nWayland's security model blocks X11-style automation. Solutions require:\n- Compositor-specific IPC (niri msg)\n- App opt-in via AT-SPI accessibility\n- Or vision model interpretation of pixels","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-17T12:42:17.863074501-08:00","updated_at":"2025-12-17T14:12:59.143207802-08:00","dependencies":[{"issue_id":"skills-kg7","depends_on_id":"skills-pdg","type":"blocks","created_at":"2025-12-17T13:59:59.915105471-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"skills-kg7","depends_on_id":"skills-ebl","type":"blocks","created_at":"2025-12-17T14:13:41.679692009-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"skills-kg7","depends_on_id":"skills-bww","type":"blocks","created_at":"2025-12-17T14:13:41.725196677-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-kmj","title":"Orch skill: document or handle orch not in PATH","description":"Skill docs show 'orch consensus' but orch requires 'uv run' from ~/proj/orch. Either update skill to invoke correctly or document installation requirement.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-01T17:29:48.844997238-08:00","updated_at":"2025-12-01T18:28:11.374048504-08:00","closed_at":"2025-12-01T18:28:11.374048504-08:00"}
{"id":"skills-le9","title":"beads new --from-cursor: capture symbol context","description":"When creating a bead, auto-capture LSP context:\n- Current symbol FQN (fully qualified name)\n- Definition snippet\n- Top 10 references/callers\n- Current diagnostics for the symbol\n\nMakes beads self-contained without copy/paste archaeology. Symbol URI allows jumping back to exact location even if file moved.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-24T02:29:55.989876856-05:00","updated_at":"2025-12-24T02:29:55.989876856-05:00","dependencies":[{"issue_id":"skills-le9","depends_on_id":"skills-gga","type":"blocks","created_at":"2025-12-24T02:30:06.416484732-05:00","created_by":"daemon"}]}
{"id":"skills-lie","title":"Compare DEPENDENCIES.md with upstream","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:15:53.925914243-08:00","updated_at":"2025-12-03T20:19:28.665641809-08:00","closed_at":"2025-12-03T20:19:28.665641809-08:00","dependencies":[{"issue_id":"skills-lie","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:53.9275694-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-lvg","title":"Compare ISSUE_CREATION.md with upstream","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:15:54.609282051-08:00","updated_at":"2025-12-03T20:19:29.134966356-08:00","closed_at":"2025-12-03T20:19:29.134966356-08:00","dependencies":[{"issue_id":"skills-lvg","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:54.610717055-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-lzk","title":"Simplify branch name generation in create-new-feature.sh","description":"File: .specify/scripts/bash/create-new-feature.sh (lines 137-181)\n\nIssues:\n- 3 nested loops/conditionals\n- Complex string transformations with multiple sed operations\n- Stop-words list and filtering logic hard to maintain\n\nFix:\n- Extract to separate function\n- Simplify word filtering logic\n- Add input validation\n\nSeverity: MEDIUM","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-24T02:51:14.286951249-05:00","updated_at":"2025-12-24T02:51:14.286951249-05:00"}
{"id":"skills-m21","title":"Apply niri-window-capture code review recommendations","description":"CODE-REVIEW-niri-window-capture.md identifies action items: add dependency checks to scripts, improve error handling for niri failures, add screenshot directory validation, implement rate limiting. See High/Medium priority sections.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:24.648846875-08:00","updated_at":"2025-12-28T20:16:53.914141949-05:00","closed_at":"2025-12-28T20:16:53.914141949-05:00","close_reason":"Implemented all 4 high-priority recommendations from code review: dependency checks, directory validation, error handling, audit logging"}
{"id":"skills-mx3","title":"spec-review: Define consensus thresholds and decision rules","description":"'Use judgment' for mixed results leads to inconsistent decisions.\n\nDefine:\n- What constitutes consensus (2/3? unanimous?)\n- How to handle NEUTRAL votes\n- Tie-break rules\n- When human override is acceptable and how to document it","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-15T00:23:24.121175736-08:00","updated_at":"2025-12-15T13:58:04.339283238-08:00","closed_at":"2025-12-15T13:58:04.339283238-08:00"}
{"id":"skills-njb","title":"worklog: clarify or remove semantic compression references","description":"SKILL.md references 'semantic compression is a planned workflow' multiple times but it's not implemented. Speculative generality - adds cognitive load for non-existent feature. Either implement or move to design notes. Found by smells lens review.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-25T02:03:25.387405002-05:00","updated_at":"2025-12-27T10:11:48.169923742-05:00","closed_at":"2025-12-27T10:11:48.169923742-05:00","close_reason":"Closed"}
{"id":"skills-oes","title":"Define skill manifest format","description":"Skills need to declare their interface so beads can validate.\n\nManifest should include:\n- Required inputs (args, env vars)\n- Optional inputs with defaults\n- Expected outputs (files, artifacts)\n- Preconditions (tools, repos, permissions)\n\nLocation: SKILL.md frontmatter or separate manifest.yaml\n\nEnables: Proto validation before spawning, better error messages.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T19:49:30.673372413-05:00","updated_at":"2025-12-23T20:55:04.427620449-05:00","closed_at":"2025-12-23T20:55:04.427620449-05:00","close_reason":"ADRs revised with orch consensus feedback"}
{"id":"skills-p2o","title":"Refactor update-agent-context.sh: array+loop for agents","description":"File: .specify/scripts/bash/update-agent-context.sh (772 lines)\n\nIssues:\n- 12 nearly-identical if-blocks in update_all_existing_agents() (lines 632-701)\n- Should be refactored into loop with array of agent configurations\n- Current pattern repeats: if [[ -f \"$CLAUDE_FILE\" ]]; then update_agent_file...\n\nFix:\n- Create AGENTS array with (file, name, format) tuples\n- Replace 12 if-blocks with single for loop\n- Estimated reduction: 60 lines\n\nSeverity: HIGH","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T02:50:57.385820971-05:00","updated_at":"2025-12-25T01:44:58.370191619-05:00","closed_at":"2025-12-25T01:44:58.370191619-05:00","close_reason":"update-agent-context.sh is .specify upstream code, not maintained here"}
{"id":"skills-p3v","title":"Cross-language FFI wormholes via LSP","description":"Bridge FFI boundaries where standard LSPs go blind:\n- Rust extern C → clangd lookup\n- Go CGO → match C symbols\n- Python FFI → trace bindings\n\nGenerate synthetic go-to-definition maps. When hovering over C call in Rust, intercept hover request, query C LSP, inject C definition into Rust tooltip.\n\nEnables seamless polyglot navigation.","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-24T02:29:57.597602745-05:00","updated_at":"2025-12-29T14:37:35.354771695-05:00","closed_at":"2025-12-29T14:37:35.354771695-05:00","close_reason":"Parked: waiting on gastown (Steve Yegge's orchestration layer for beads). Revisit when gastown lands."}
{"id":"skills-pdg","title":"Enable AT-SPI for UI tree access","description":"## Findings\n\nAT-SPI (Assistive Technology Service Provider Interface) provides semantic UI tree access - buttons, labels, text fields, their states and coordinates.\n\n### Current state\n- AT-SPI is **disabled** on this NixOS system\n- Environment has `NO_AT_BRIDGE=1` and `GTK_A11Y=none`\n- No apps are exposing accessibility info\n\n### To enable\n```nix\nservices.gnome.at-spi2-core.enable = true;\n```\n\nThen rebuild and re-login (apps must start fresh to register with bus).\n\n### App support\n- **GTK apps**: Should work automatically\n- **Qt apps**: Need `QT_LINUX_ACCESSIBILITY_ALWAYS_ON=1` env var\n- **Electron**: Varies by app, often poor support\n\n### Trade-offs\n- Adds runtime overhead to all GTK/Qt apps\n- May want as boot-time option rather than always-on\n- Only useful for automation/accessibility use cases\n\n### Tools once enabled\n- `python3-pyatspi` / `dogtail` for querying UI tree\n- `accerciser` for visual inspection of accessibility tree\n\n### Next steps\n**Blocked by dotfiles-0l3** - NixOS config change filed in dotfiles repo.\n\nAfter dotfiles change deployed:\n1. Test with common apps (Firefox, terminals, etc.)\n2. Build skill to query UI elements\n\n## Related\nParent epic: skills-kg7 (Desktop automation for Wayland/niri)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-17T13:59:55.799402507-08:00","updated_at":"2025-12-29T15:05:00.794702992-05:00"}
{"id":"skills-prt","title":"worklog: remove inline section list, reference template","description":"SKILL.md lists 11 sections that duplicate worklog-template.org. Will drift. Replace with directive to parse sections from template dynamically. Found by bloat lens review.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T02:03:16.811093872-05:00","updated_at":"2025-12-27T10:05:51.513685966-05:00","closed_at":"2025-12-27T10:05:51.513685966-05:00","close_reason":"Closed"}
{"id":"skills-pu4","title":"Clean up stale beads.left.jsonl merge artifact","description":"bd doctor flagged multiple JSONL files. beads.left.jsonl is empty merge artifact that should be removed: git rm .beads/beads.left.jsonl","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:33.292221449-08:00","updated_at":"2025-11-30T12:37:49.916795223-08:00","closed_at":"2025-11-30T12:37:49.916795223-08:00"}
{"id":"skills-qeh","title":"Add README.md for web-research skill","description":"web-research skill has SKILL.md and scripts but no README.md. AGENTS.md says README.md is for humans, contains installation instructions, usage examples, prerequisites.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:14.475647113-08:00","updated_at":"2025-12-28T22:37:48.339288261-05:00","closed_at":"2025-12-28T22:37:48.339288261-05:00","close_reason":"Added README.md with prerequisites, usage examples, and cross-references","dependencies":[{"issue_id":"skills-qeh","depends_on_id":"skills-vb5","type":"blocks","created_at":"2025-11-30T12:01:30.278784381-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-r5c","title":"Extract shared logging library from scripts","description":"Duplicated logging/color functions across multiple scripts:\n- bin/deploy-skill.sh\n- skills/tufte-press/scripts/generate-and-build.sh\n- Other .specify scripts\n\nPattern repeated:\n- info(), warn(), error() functions\n- Color definitions (RED, GREEN, etc.)\n- Same 15-20 lines in each file\n\nFix:\n- Create scripts/common-logging.sh\n- Source from all scripts that need it\n- Estimated reduction: 30+ lines of duplication\n\nSeverity: MEDIUM","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T02:50:58.324852578-05:00","updated_at":"2025-12-29T18:48:20.448077879-05:00","closed_at":"2025-12-29T18:48:20.448077879-05:00","close_reason":"Minimal duplication: only 2 files with different logging styles. Shared library overhead not justified."}
{"id":"skills-rex","title":"Test integration on worklog skill","description":"Use worklog skill as first real test case:\n- Create wisp for worklog execution\n- Capture execution trace\n- Test squash → digest\n- Validate trace format captures enough info for replay\n\nMigrated from dotfiles-drs.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T19:21:18.75525644-05:00","updated_at":"2025-12-29T13:55:35.814174815-05:00","closed_at":"2025-12-29T13:55:35.814174815-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed.","dependencies":[{"issue_id":"skills-rex","depends_on_id":"skills-3em","type":"blocks","created_at":"2025-12-23T19:22:00.34922734-05:00","created_by":"dan"}]}
{"id":"skills-rpf","title":"Implement playwright-visit skill for browser automation","description":"## Overview\nBrowser automation skill using Playwright to visit web pages, take screenshots, and extract content.\n\n## Key Findings (from dotfiles investigation)\n\n### Working Setup\n- Use `python312Packages.playwright` from nixpkgs (handles Node driver binary patching for NixOS)\n- Use `executable_path='/run/current-system/sw/bin/chromium'` to use system chromium\n- No `playwright install` needed - no browser binary downloads\n\n### Profile Behavior\n- Fresh/blank profile every launch by default\n- No cookies, history, or logins from user's browser\n- Can persist state with `storage_state` parameter if needed\n\n### Example Code\n```python\nfrom playwright.sync_api import sync_playwright\n\nwith sync_playwright() as p:\n browser = p.chromium.launch(\n executable_path='/run/current-system/sw/bin/chromium',\n headless=True\n )\n page = browser.new_page()\n page.goto('https://example.com')\n print(page.title())\n browser.close()\n```\n\n### Why Not uv/pip?\n- Playwright pip package bundles a Node.js driver binary\n- NixOS can't run dynamically linked executables without patching\n- nixpkgs playwright handles this properly\n\n## Implementation Plan\n1. Create `skills/playwright-visit/` directory\n2. Add flake.nix with devShell providing playwright\n3. Create CLI script with subcommands:\n - `screenshot \u003curl\u003e \u003coutput.png\u003e` - capture page\n - `text \u003curl\u003e` - extract text content \n - `html \u003curl\u003e` - get rendered HTML\n - `pdf \u003curl\u003e \u003coutput.pdf\u003e` - save as PDF\n4. Create skill definition for Claude Code integration\n5. Document usage in skill README\n\n## Dependencies\n- nixpkgs python312Packages.playwright\n- System chromium (already in dotfiles)\n\n## Related\n- dotfiles issue dotfiles-m09 (playwright skill request)","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-16T16:02:28.577381007-08:00","updated_at":"2025-12-29T00:09:50.681141882-05:00","closed_at":"2025-12-29T00:09:50.681141882-05:00","close_reason":"Implemented: SKILL.md, visit.py CLI (screenshot/text/html/pdf), flake.nix devShell, README. Network down so couldn't test devShell build, but code complete."}
{"id":"skills-s92","title":"Add tests for config injection (deploy-skill.sh)","description":"File: bin/deploy-skill.sh (lines 112-137)\n\nCritical logic with NO test coverage:\n- Idempotency (running twice should be safe)\n- Correct brace matching in Nix\n- Syntax validity of injected config\n- Rollback on failure\n\nRisk: MEDIUM-HIGH - can break dotfiles Nix config\n\nFix:\n- Test idempotent injection\n- Validate Nix syntax after injection\n- Test with malformed input\n\nSeverity: MEDIUM","status":"in_progress","priority":3,"issue_type":"task","created_at":"2025-12-24T02:51:01.314513824-05:00","updated_at":"2026-01-02T06:15:45.352802681-05:00"}
{"id":"skills-ty7","title":"Define trace levels (audit vs debug)","description":"Two trace levels to manage noise vs utility:\n\n1. Audit trace (minimal, safe, always on):\n - skill id/ref, start/end\n - high-level checkpoints\n - artifact hashes/paths\n - exit status\n\n2. Debug trace (opt-in, verbose):\n - tool calls with args\n - stdout/stderr snippets\n - expanded inputs\n - timing details\n\nConsider OpenTelemetry span model as reference.\nGPT proposed this; Gemini focused on rotation/caps instead.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T19:49:48.514684945-05:00","updated_at":"2025-12-29T13:55:35.838961236-05:00","closed_at":"2025-12-29T13:55:35.838961236-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed."}
{"id":"skills-u3d","title":"Define skill trigger conditions","description":"How does an agent know WHEN to apply a skill/checklist?\n\nOptions:\n- frontmatter triggers: field with patterns\n- File-based detection\n- Agent judgment from description\n- Beads hooks on state transitions\n- LLM-based pattern detection","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T17:59:09.69468767-05:00","updated_at":"2025-12-28T22:25:38.579989006-05:00","closed_at":"2025-12-28T22:25:38.579989006-05:00","close_reason":"Resolved: agent judgment from description is the standard. Good descriptions + 'When to Use' sections are sufficient. No new trigger mechanism needed - would add complexity without clear benefit."}
{"id":"skills-uan","title":"worklog: merge Guidelines and Remember sections","description":"Guidelines (8 points) and Remember (6 points) sections overlap significantly - both emphasize comprehensiveness, future context, semantic compression. Consolidate into single principles list. Found by bloat lens review.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T02:03:16.148596791-05:00","updated_at":"2025-12-27T10:05:51.527595332-05:00","closed_at":"2025-12-27T10:05:51.527595332-05:00","close_reason":"Closed"}
{"id":"skills-uz4","title":"Compare RESUMABILITY.md with upstream","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-03T20:15:54.897754095-08:00","updated_at":"2025-12-03T20:19:29.384645842-08:00","closed_at":"2025-12-03T20:19:29.384645842-08:00","dependencies":[{"issue_id":"skills-uz4","depends_on_id":"skills-ebh","type":"discovered-from","created_at":"2025-12-03T20:15:54.899671178-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"skills-vb5","title":"Resolve web search design questions","description":"web_search_brainstorm.md has unanswered design questions: single smart skill vs explicit flags, specific sources priority, raw links vs summaries. Need user input to finalize web-search/web-research direction.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-30T11:58:33.482270742-08:00","updated_at":"2025-12-28T22:21:05.814118092-05:00","closed_at":"2025-12-28T22:21:05.814118092-05:00","close_reason":"Resolved: keep 2 skills, web-search for OpenCode only (Claude has built-in), web-research for both. Source filtering via WebSearch domains. Summaries by default."}
{"id":"skills-vjm","title":"Refactor update-agent-context.sh: reduce nesting depth","description":"File: .specify/scripts/bash/update-agent-context.sh\n\nIssues:\n- update_existing_agent_file() has 4-level deep nesting (lines 360-499)\n- State machine with multiple variables: in_tech_section, in_changes_section, tech_entries_added\n- 70+ lines of while loop processing\n\nFix:\n- Extract file processing to separate function\n- Consider sed/awk for line-based transformations\n- Use guard clauses to reduce nesting\n\nSeverity: HIGH","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T02:50:57.874439288-05:00","updated_at":"2025-12-25T01:44:58.38265672-05:00","closed_at":"2025-12-25T01:44:58.38265672-05:00","close_reason":"update-agent-context.sh is .specify upstream code, not maintained here"}
{"id":"skills-vpy","title":"Design checklist support for skills","description":"Design how checklists fit into the skills system.\n\nQuestions:\n- Skill-as-checklist (SKILL.md with just items, no scripts)?\n- Separate checklist format?\n- Trigger conditions in frontmatter?\n- Integration with bd audit for tracking?\n\nTiers considered:\n1. AGENTS.md (simplest, no tracking)\n2. Skill-as-checklist (deployed, invokable)\n3. Proto (full tracking, overhead)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T17:59:09.569427412-05:00","updated_at":"2025-12-29T13:55:35.848981398-05:00","closed_at":"2025-12-29T13:55:35.848981398-05:00","close_reason":"Parked with ADR-001: skills-molecules integration deferred. Current simpler approach (skills as standalone) works well. Revisit when complex orchestration needed."}
{"id":"skills-wm9","title":"Research Steve Yegge's orchestration work","description":"Steve Yegge is working on something new related to AI orchestration. Research what it is and how it might inform our skills+molecules integration design.\n\nBlocks: skills-hin (ADR finalization)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T02:41:47.848905848-05:00","updated_at":"2025-12-24T02:42:24.40239935-05:00","closed_at":"2025-12-24T02:42:24.40239935-05:00","close_reason":"Not needed - just parking the ADR work"}
{"id":"skills-x2l","title":"Investigate hooks for parallel orch queries","description":"When using orch skill, it would be useful to spin off multiple model queries in parallel automatically (e.g., gemini + gpt simultaneously). Explore if Claude Code hooks can trigger parallel background processes when the orch skill is invoked.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-06T19:29:00.165752425-08:00","updated_at":"2025-12-29T15:49:43.831970326-05:00","closed_at":"2025-12-29T15:49:43.831970326-05:00","close_reason":"Investigated. Hooks are synchronous with 60s timeout - unsuitable for background orch queries. Alternatives: (1) SessionStart hook for initial consensus, (2) Explicit skill invocation, (3) PostToolUse for validation. orch consensus already runs models in parallel internally."}
{"id":"skills-x33","title":"Add tests for branch name generation","description":"File: .specify/scripts/bash/create-new-feature.sh (lines 137-181)\n\nCritical logic with NO test coverage:\n- Word filtering with stop-words\n- Acronym detection\n- Unicode/special character handling\n- Max length boundary (244 bytes)\n- Empty/single-word descriptions\n\nRisk: HIGH - affects all branch creation\n\nFix:\n- Create test suite with edge cases\n- Test stop-word filtering accuracy\n- Test boundary conditions\n\nSeverity: HIGH","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T02:51:00.311664646-05:00","updated_at":"2026-01-02T00:53:35.147800477-05:00","closed_at":"2026-01-02T00:53:35.147800477-05:00","close_reason":"Created test suite with 27 tests covering stop words, acronyms, word limits, special chars, unicode, edge cases, and fallback logic"}
{"id":"skills-ybq","title":"Reorganize lens directory structure","description":"Current structure puts ops lenses as subdirectory of code-review lenses:\n\n```\n~/.config/lenses/ \u003c- code-review lenses\n~/.config/lenses/ops/ \u003c- ops-review lenses\n```\n\nThis is asymmetric. Consider:\n\nOption A: Separate top-level directories\n```\n~/.config/lenses/code-review/\n~/.config/lenses/ops-review/\n```\n\nOption B: Keep flat but with prefixes\n```\n~/.config/lenses/code-*.md\n~/.config/lenses/ops-*.md\n```\n\nOption C: Per-skill lens directories\n```\n~/.claude/skills/code-review/lenses/\n~/.claude/skills/ops-review/lenses/\n```\n\nRequires updating:\n- modules/ai-skills.nix (deployment paths)\n- skills/code-review/SKILL.md (expected paths)\n- skills/ops-review/SKILL.md (expected paths)","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-01T21:57:06.726997606-05:00","created_by":"dan","updated_at":"2026-01-02T00:24:53.647409845-05:00","closed_at":"2026-01-02T00:24:53.647409845-05:00","close_reason":"Reorganized lens directories: code-review → ~/.config/lenses/code/, ops-review → ~/.config/lenses/ops/. Updated ai-skills.nix, SKILL.md, and README references."}
{"id":"skills-yxv","title":"worklog: extract hardcoded path to variable","description":"SKILL.md repeats ~/.claude/skills/worklog/ path 4-5 times. Define SKILL_ROOT once, reference throughout. Found by bloat+smells lens review.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T02:03:15.831699081-05:00","updated_at":"2025-12-27T10:05:51.532722628-05:00","closed_at":"2025-12-27T10:05:51.532722628-05:00","close_reason":"Closed"}
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